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Search results for r mutations

8 search results found

Tcgamutations ⭐ 44

R data package for pre-compiled somatic mutations from TCGA cohorts (from Broad Firehose and TCGA MC3 Project)

Package to wrangle and visualize genomic data in R

Ctdnatools ⭐ 17

R package to work with ctDNA sequencing data

Homoplasyfinder ⭐ 12

A tool to identify and annotate homoplasies on a phylogeny and sequence alignment

A tutorial on structural variant calling for short read sequencing data

Annotatemaf ⭐ 7

Add functional variant annotation to MAF file

Aa_subtypes ⭐ 7

Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape

💹 The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).

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