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Search results for r mass spectrometry
mass-spectrometry
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46 search results found
Xcms
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160
This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis
Msnbase
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115
Base Classes and Functions for Mass Spectrometry and Proteomics
Rforproteomics
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69
Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
Maldiquant
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56
Quantitative Analysis of Mass Spectrometry Data
Patroon
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52
Workflow solutions for mass-spectrometry based non-target analysis.
Protti
⭐
50
Picotti lab data analysis package.
Rawrr
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48
Computational analysis of raw-formatted mass spectrometry data in R. Brings your Orbitrap data to life!
Pmartr
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34
The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data.
Rawdiag
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33
Brings Orbitrap Mass Spectrometry Data to Life; Multi-platform, Fast and Colorful R package.
Spectra
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29
Low level infrastructure to handle MS spectra
Tools Metabolomics
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21
Galaxy tools for metabolomics maintained by Workflow4Metabolomics
Idbacapp
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20
A MALDI Mass Spectrometry Bioinformatics Platform
Qfeatures
⭐
19
Quantitative features for mass spectrometry data
Metaboseek
⭐
18
Interactive software to analyze and browse mass spectrometry data
Scp
⭐
18
Single cell proteomics data processing
Mscoreutils
⭐
16
Core Utils for Mass Spectrometry Data
Compounddb
⭐
15
Creating and using (chemical) compound databases
Metax
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14
metaX: a flexible and comprehensive software for processing omics data.
Envigcms
⭐
14
GC/LC-MS data analysis for environmental science
Artms
⭐
13
Analytical R Tools for Mass Spectrometry
Peakpanther
⭐
12
On-instrument and post-acquisition targeted feature extraction
Pomashiny
⭐
11
🍎 Web-based User-friendly Workflow for Metabolomics and Proteomics Data Analysis
Maldiquantforeign
⭐
9
Import/Export routines for MALDIquant
Irs_normalization
⭐
9
An exploration of internal reference scaling (IRS) normalization in isobaric tagging proteomics experiments.
Promor
⭐
9
A comprehensive R package for label-free proteomics data analysis and modeling
Protviz
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9
Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
Quantable
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8
Streamlines descriptive analysis of quantitative mass spectrometry data.
Bfabricshiny
⭐
8
Manage life sciences data using R and b-fabric - a WSDL/REST interface and a tool box; main focus on MS data
Pmd
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7
Paired Mass Distance(PMD) analysis for GC/LC-MS based nontarget analysis
Tmt_analysis_examples
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7
Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.
Lobstahs
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7
Git repository for the R package "LOBSTAHS" (Lipid and Oxylipin Biomarker Screening Through Adduct Hierarchy Sequences)
Plexdia
⭐
7
Multiplexed data-independent acquisition (plexDIA) for increasing proteomics throughput. The code is distributed by an MIT license.
Metfamily
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7
Understanding metabolism is fundamental in biomedical and plant research and the identification and quantification of thousands of metabolites by mass spectrometry in modern metabolomics is a prerequisite for elucidating this area. However, the identification of metabolites is a major bottleneck in traditional approaches hampering advances. Here, we present a novel approach for the untargeted discovery of metabolite families offering a bird's eye view of metabolic regulation in comparative metab
Metabocoreutils
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7
Core utilities for metabolomics.
Msquality
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6
Msstatsconvert
⭐
6
Converter functions for the MSstats package
Metabcombiner
⭐
6
metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation
Avant_garde
⭐
6
Avant-garde (AvG) is a new tool to refine Data-Independent Acquisition (and Parallel Reaction Monitoring) by removing interfered transitions, adjusting integration boundaries and scoring peaks to control the FDR.
Hadex
⭐
6
Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data
Rmwf
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6
Reproducilble Metabolomics Workflow
Idsl.ufa
⭐
5
United Formula Annotation (UFA) for LC-HRMS data
Unimod
⭐
5
Amino acid modifications for mass spectrometry
Untargeted_metabolomics_workflow
⭐
5
Collaborative workflow for untargeted metabolomics data processing and analysis using open-source tools. https://doi.org/10.3390/metabo13040463
Protgenerics
⭐
5
S4 generic functions for Bioconductor mass spectrometry infrastructure
Spectripy
⭐
5
Interfacing R's Spectra package with the Python world.
Msbackendtimstof
⭐
5
Spectra backend supporting TimsTOF data files using the opentimsr package.
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