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40 search results found
Gwa_tutorial
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184
A comprehensive tutorial about GWAS and PRS
Qqman
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141
An R package for creating Q-Q and manhattan plots from GWAS results
Gwas_scripts
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127
Codebook from my GWAS cookbook
Mungesumstats
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59
Rapid standardisation and quality control of GWAS or QTL summary statistics
Magma_celltyping
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50
Find causal cell-types underlying complex trait genetics
Locuscomparer
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42
LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
Lme4qtl
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33
Mixed models @lme4 + custom covariances + parameter constraints
Bgwas
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33
R package to perform Bayesian Genome-Wide Association Studies
Bgdata
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30
A Suite of Packages for Analysis of Big Genomic Data
Qtcat
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25
Quantitative Trait Cluster Association Test in R
Hierfstat
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22
the hierfstat package
Gwas Pipeline
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20
This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GWAS.
Echolocator
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20
Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
Gchromvar
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18
Cell type specific enrichments using finemapped variants and quantitative epigenetic data
Rtassel
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17
R front-end for TASSEL
Adjclust
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16
Adjacency-constrained hierarchical clustering of a similarity matrix
Gglocuszoom
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15
Create LocusZoom-style plots in R.
Farmcpupp
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14
Perform GWAS using the FarmCPU model.
Containers
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13
CoMorMent-Containers
Gwastools
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13
Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
Cataloguer
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12
Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
Npdr
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12
NPDR: Nearest-neighbor Projected-Distance Regression with the generalized linear model
Introduction_to_gwas
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11
https://filippob.github.io/introduction_to_gwas/
Metausat
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10
metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using univariate GWAS summary statistics.
Hogwash
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10
Three bacterial GWAS methods all rolled into one easy-to-use R package
Rhoge
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9
Estimate genetic correlation using predicted expression
Gwas Vcf Specification
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9
Specification for the GWAS-VCF format (manuscript in preparation)
Gimpute
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9
An efficient genetic data imputation pipeline
Mvmapit
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8
The multivariate MArginal ePIstasis Test
Quincunx
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8
quincunx: an R package to query, download and wrangle PGS Catalog data
Statgengwas
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8
See https://biometris.github.io/statgenGWAS for a full description
Locusexplorer
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8
An interactive graphical illustration of genetic associations and their biological context
Multiskat
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8
MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/functions (including an example dataset) to carry out the MultiSKAT tests.
Mr_bacon
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7
Mendelian Randomization with Biomarker Associations for Causality with Outcomes
Tad_pathways_pipeline
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7
Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs
Ttplot
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6
Tao Yan's Plot Toolkit
Timshel 2020
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6
Code to reproduce analysis and figures for 'Genetic mapping of etiologic brain cell types for obesity' (Timshel, eLife 2020)
Ctlmapping
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5
Correlated Trait Locus (CTL) mapping
Postgwas Tools
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5
These are tools for post GWAS analysis. Please see below link as a document for install and use.
Pcsstools
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5
Tools for regression using pre-computed summary statistics
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