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25 search results found
Genomics
⭐
154
A collection of scripts and notes related to genomics and bioinformatics
Bambu
⭐
150
Reference-guided transcript discovery and quantification for long read RNA-Seq data
Das_tool
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124
DAS Tool
Polyester
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76
Bioconductor package "polyester", devel version. RNA-seq read simulator.
Tidysq
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28
tidy processing of biological sequences in R
Adapters
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26
Adapters for trimming
Rsamtools
⭐
25
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Mgs Gut
⭐
25
Analysing Metagenomic Species (MGS)
Repeatprofiler
⭐
19
Rnaskim
⭐
19
RNA-Skim: a rapid method for RNA-Seq quantification at transcript level
Bandits
⭐
17
BANDITS: Bayesian ANalysis of DIfferenTial Splicing
Ampir
⭐
16
antimicrobial peptide prediction in R
Phyltr
⭐
14
Phylogenetic Analysis of Long Terminal Repeat Retrotransposons
Angsd Wrapper
⭐
13
Utilities for analyzing next generation sequencing data.
Covid19
⭐
9
covid19 exploration
Micropan
⭐
9
R package for microbial pangenomics
16srrna Hex Tutorial
⭐
7
16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.
Popgen
⭐
6
A collection of scripts I wrote when doing population genetics: calculate GC content, perform the McDonald-Kreitman test, calculate Tajima's D, convert VCF files to FASTA files using a reference genome
Proteomegenerator
⭐
6
Proteome Generator
Covidgenotyper
⭐
6
Visualization toolkit for SARS-CoV-2 whole genome sequencing data
Predrad
⭐
6
Scripts
Bio Bin
⭐
5
Handy reusable bioinformatic scripts
Mlstar
⭐
5
An easy way of MLSTyping your genomes in R.
Ncov
⭐
5
Analyses of SARS-CoV-2 genomes
Ribotaper
⭐
5
A copy of RiboTaper v1.2
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1-25 of 25 search results
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