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Search results for r copy number variation

copy-number-variation x

12 search results found

Personal Cancer Genome Reporter (PCGR)

Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data

Titancna ⭐ 59

Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer

Doabsolute ⭐ 31

📦 Automate Absolute Copy Number Calling using 'ABSOLUTE' package

Aceseqworkflow ⭐ 22

Allele-specific copy number estimation with whole genome sequencing

VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number variants (CNVs) from targeted next-generation sequencing data. For algorithmic details, see Pugh TJ et al. Genet Med. 2016 Jul;18(7):712-9.

POSTRE: Prediction Of STRuctural variant Effects

CNAqc - Copy Number Alteration (CNA) Quality Check package

Workflow for Sequenza, cellularity and ploidy

Copynumberplots ⭐ 6

R package to create plots representing copy number data using karyoploteR

Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ratio calculations

Cnvmetrics ⭐ 5

R Package to compare copy number variant (CNV) results from multiple samples/methods

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