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Search results for r conda

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36 search results found
H2o4gpu ⭐ 421
H2Oai GPU Edition
Pyreadr ⭐ 274
Python package to read and write R RData and Rds files into/from pandas dataframes. No R or other external dependencies required.
Python Glmnet ⭐ 178
A python port of the glmnet package for fitting generalized linear models via penalized maximum likelihood.
Saige ⭐ 140
Ssh ⭐ 126
Native SSH client in R based on libssh
Btsa ⭐ 88
Berlin Time Series Analysis Repository
Sartools ⭐ 87
Statistical Analysis of RNA-Seq Tools
Xtensor R ⭐ 86
R bindings for xtensor
Stitch ⭐ 67
STITCH - Sequencing To Imputation Through Constructing Haplotypes
Meteore ⭐ 58
Automatic DNA methylation detection from nanopore tools and their consensus model
Dalextra ⭐ 56
Extensions for the DALEX package
R Bridge Tutorial Notebooks ⭐ 50
Jupyter notebooks demonstrating setup and use of the R-ArcGIS bridge. The repo includes datasets required to run the Jupyter notebooks.
Dchic ⭐ 44
dcHiC: Differential compartment analysis for Hi-C datasets
Introduction To Conda For Data Scientists ⭐ 35
Introduction to Conda for (Data) Scientists
Phyloprofile ⭐ 26
A phylogenetic profile analysis tool
Discover ⭐ 23
DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data
Musica ⭐ 23
MuSiCa - Mutational Signatures in Cancer
Tools Metabolomics ⭐ 21
Galaxy tools for metabolomics maintained by Workflow4Metabolomics
Ezrun ⭐ 21
An R meta-package for the analysis of Next Generation Sequencing data
Mageckflute ⭐ 20
Integrative analysis pipeline for pooled CRISPR functional genetic screens
Darr ⭐ 20
A Python library for numpy arrays that persist on disk in a format that is simple, self-documented and tool-independent, and maximizes universal readability.
Echolocator ⭐ 20
Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
Marge ⭐ 16
API for HOMER in R for Genomic Analysis using Tidy Conventions
Rstudio ⭐ 12
Docker image for analyses using RStudio and Python-Conda
Cataloguer ⭐ 12
Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
Reproducible_bioinformatics ⭐ 10
Workshop material for BioC Asia 2019
Data_curator ⭐ 9
Data and metadata ingress app
Bmo ⭐ 8
BMO - a tool for predicting TF binding from ATAC-seq data
Sparklyr Distribute ⭐ 7
Example code of spark_apply with sparklyr for CDH
Onekp Gene Family Evo ⭐ 7
Gene family evolution analysis of OneKP capstone paper
Timer ⭐ 6
Deconvolve individual immune cell types from cancer data
Macsr ⭐ 5
MACS3 R/BioC wrapper
Structtoolbox ⭐ 5
R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox
Herper ⭐ 5
The Herper package is a simple toolset to install and manage Conda packages and environments from R.
Monocle Scripts ⭐ 5
Command line scripts wrapping functions in monocle3
Seqcat ⭐ 5
A Bioconductor R-package for cell evaluation, characterisation and authentication using high throughput sequencing data.
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