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Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptomics (ST)).

Singlecellhaystack ⭐ 68

Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).

Scperturb ⭐ 56

scPerturb: A resource and a python/R tool for single-cell perturbation data

Normalize CITEseq Data

ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration.

Scpca Nf ⭐ 11

scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data

Cite Seq_optimization ⭐ 7

Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments

experimental interface between R and scvi-tools

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