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Search results for r atac seq

atac-seq x
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14 search results found
Scatac Benchmarking ⭐ 92
Benchmarking computational single cell ATAC-seq methods
Chromvar ⭐ 69
chromatin Variability Across Regions (of the genome!)
Scatac Pro ⭐ 64
A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
Wiggleplotr ⭐ 28
A small R package to make sequencing read coverage plots in R.
Deepstats ⭐ 27
deepStats: a stastitical toolbox for deeptools and genomic signals
Irena ⭐ 24
R package IReNA
Biosequtils ⭐ 21
Extract Sequence from Genome According to Annotation File
Atac Seq ⭐ 19
Basic workflow for ATAC-seq analysis
Gchromvar ⭐ 18
Cell type specific enrichments using finemapped variants and quantitative epigenetic data
Alps ⭐ 12
AnaLysis routines for ePigenomicS data.
Atacr ⭐ 12
Analysing Capture Seq Count Data
Cinar ⭐ 10
A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)
Ssvqc ⭐ 5
R package for QC of enrichment based NGS assays. ChIP-seq, cut&run, ATAC-seq, etc.
As_analysis ⭐ 5
A complete Snakemake pipeline for detecting allele specific expression
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