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Search results for pytorch protein
protein
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pytorch
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27 search results found
Graphein
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932
Protein Graph Library
Tape
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348
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
Protein Sequence Embedding Iclr2019
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203
Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
Openprotein
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161
A PyTorch framework for prediction of tertiary protein structure
Deeprank
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145
This repository has been integrated in https://github.com/DeepRank/deeprank2
Ontoprotein
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98
Code and datasets for the ICLR2022 paper "OntoProtein: Protein Pretraining With Gene Ontology Embedding"
Proteinworkshop
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93
Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities.
Cytoself
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58
Self-supervised models for encoding protein localization patterns from microscopy images
Proteingcn
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47
ProteinGCN: Protein model quality assessment using Graph Convolutional Networks
Protein Localization
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43
Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of proteins 🔬
Deepaccnet
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40
Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.
Ssm Dta
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34
SSM-DTA: Breaking the Barriers of Data Scarcity in Drug-Target Affinity Prediction (Briefings in Bioinformatics 2023)
Kaggle Human Protein Atlas Image Classification
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28
Kaggle 2018 @ Human Protein Atlas Image Classification
Protein Transformer
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25
Predicting protein structure through sequence modeling
Eve
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23
Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.
Pnerf
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21
Vde_metadynamics
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20
Enhanced protein mutational sampling using time-lagged variational autoencoders
Paccmann_proteomics
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19
PaccMann models for protein language modeling
Pytorch Rgn
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19
Recurrent Geometric Network in Pytorch
Noise2noise Cryo Em Image Denoising
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18
pytorch implementation of noise2noise for Cryo-EM image denoising
Protease Gcnn Pytorch
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15
Parapred Pytorch
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14
PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)
Fmol
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12
A simplified drug discovery pipeline -- generating SMILE molecular with AlphaSMILES, predicting protein structure with AlphaFold, and checking the druggability with fpocket/Amber.
Message Passing Neural Network
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11
Pytorch implementation of a message passing neural network with RNN sub-units
Pocket2drug
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9
Pytorch implementation of Pocket2Drug: a generative deep learning model to predict binding drugs for ligand-binding sites.
Struct2graph
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8
A PyTorch implementation of GCN with mutual attention for protein-protein interaction prediction
Protein Secondary Structure Prediction
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8
PyTorch implementations of protein secondary structure prediction on CB513.
Bifusion
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7
Pointsite
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5
PointSite: a point cloud segmentation tool for identification of protein ligand binding atoms
Seq Setnet
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5
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