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Search results for python transcription factors

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8 search results found

Pyscenic ⭐ 321

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

Netzoopy ⭐ 71

netZooPy is a network biology package implemented in Python.

Tf Bind Transformer ⭐ 45

A repository with exploration into using transformers to predict DNA ↔ transcription factor binding

Motifscan ⭐ 11

A motif discovery tool to detect the occurrences of known motifs

Mybmonday ⭐ 10

MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional background to the #MYB_Monday tweets

A Pythonic interface to query and access JASPAR transcription factor motifs

Variational Auto Encoders for learning binding signatures of transcription factors

Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility

Bioinformatic approach to identify functional transcription factor binding motifs

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