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Search results for python taxonomic classification
python
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taxonomic-classification
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8 search results found
Sourmash
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431
Quickly search, compare, and analyze genomic and metagenomic data sets.
Atlas
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332
ATLAS - Three commands to start analyzing your metagenome data
Flextaxd
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54
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
Kraken Biom
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33
Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).
Paroxython
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33
Tag and recommend Python exercises based on algorithmic features
Taxpasta
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21
TAXnomic Profile Aggregation and STAndardisation
Delucs
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17
This repository contains all the source files required to run DeLUCS, a deep learning clustering algorithm for DNA sequences.
Metscale
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16
MetScale: snakemake workflows to scale metagenome analyses
Pewo
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10
Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees
Castor_krfe
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9
Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences
Classification_benchmark
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7
Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification
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