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Search results for python scrna seq analysis

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8 search results found

Souporcell ⭐ 134

Clustering scRNAseq by genotypes

Quantifying experimental perturbations at single cell resolution

scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks

A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches

Split Seq_demultiplexing ⭐ 25

An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data

scRNA analysis pipeline

orthomap is a python package to extract orthologous maps (in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Orthomap results (gene ages per orthogroup) can be further used to calculate weigthed expression data (transcriptome evolutionary index) from scRNA sequencing objects.

scSPARKL is an Apache spark based pipeline for performing variety of preprocessing and downstream analysis of scRNA-seq data.

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