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Search results for python sars cov 2

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Covid 19 Data ⭐ 5,617

Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data

Nextstrain build for novel coronavirus SARS-CoV-2

Coronavirus ⭐ 1,108

Folding@home COVID-19 efforts

Seirsplus ⭐ 571

Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

Covariants ⭐ 310

Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

Open Source Covid 19 ⭐ 230

A global collection of Open Source projects during COVID-19

Covid 19 Rna Seq Datasets ⭐ 61

A repository for sharing information on available COVID-19 RNA-Seq datasets

Bioexplorer ⭐ 61

The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

Phes Odm ⭐ 47

The Public Health Environmental Surveillance Open Data Model (PHES-ODM, or ODM). A data model, dictionary and support tools for environmental surveillance.

Covid19_scenarios_data ⭐ 41

Data preprocessing scripts and preprocessed data storage for COVID-19 Scenarios project

SARS-Cov-2 Recombinant Finder for fasta sequences

Ncov Ingest ⭐ 34

A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.

Gisaid Scrapper ⭐ 31

Scrapping tool for GISAID data regarding SARS-CoV-2

Multisub ⭐ 28

Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.

Covid 19api ⭐ 26

Sars2 Stat Kr ⭐ 26

중국 우한 바이러스 한국 확진자 통계

Ena Cog Uk Wfs ⭐ 21

Collection of scripts for automated SARS-CoV-2 genome surveillance.

Pyncov 19 ⭐ 20

Flexible mechanistic epidemiological model to learn and predict the spread of COVID-19

Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.

Coronavirus Dresden ⭐ 19

Collects official SARS-CoV-2 infection statistics published by the city of Dresden.

Scraping world-wide data about COVID-19

Sars Cov 2 Processing Requests ⭐ 17

Request execution of Galaxy SARS-CoV-2 variation analysis workflows on input data you provide.

Anomalydetect ⭐ 16

Detects anomalous resting heart rate from smartwatch data.

Ncov Recombinant ⭐ 16

Reproducible workflow for SARS-CoV-2 recombinant sequence detection.

Pigx_sars Cov 2 ⭐ 16

PiGx SARS-CoV-2 wastewater sequencing pipeline

Collection of links and information about COVID-19

Covid19cuba Action ⭐ 13

GitHub Action of Covid19 Cuba Data project implemented in Python

Covigator ⭐ 11

CoVigator - Monitoring SARS-CoV-2 mutations

A set of "real-time" covid19 county-level dashboards w/ national and state choropleths for monitoring localized infection resurgences as distancing, testing and tracing measures evolve.

Vaxdesign ⭐ 9

A script that computationally designs a vaccine

Coronavirus (SARS-Cov-2) sequencing analysis

FASTQ-to-CodFreq pipeline for HIV-1 and SARS-CoV-2

Info/Data (global/italy) about COVID-19. PR welcome for other countries.

Sars Cov 2 Variants ⭐ 7

This project tries to give a glimpse of the different variants of SAR-CoV-2 in the world.

bvas: bayesian viral allele selection

Voc Identify ⭐ 7

Identify Variants of Concern from metagenomic samples of SARS-CoV-2

Ont Analysis Toolkit ⭐ 6

A toolkit for monitoring ONT MinION sequencing, followed by data analysis, for viral genomes amplified with tiled amplicon sequencing.

Intro_python_ismb2022 ⭐ 6

Code Distancing ⭐ 6

Keep your code safe from COVID-19 by staying 6 line breaks apart.

A database-driven system for handling genomic sequences of SARS-CoV-2 and screening genomic profiles.

Covid19 Eu Data Api ⭐ 6

Covid Bioinformatics ⭐ 5

Software tools to collect Coronavirus sequences and create protein and nucleotide HMMs

Covid Mvp ⭐ 5

COVID-MVP is an interactive heatmap based visualization tool for SARS-CoV-2. It tracks mutations along with their functional impact and prevalence in Variants of Concern and Interest in near-real time. COVID-MVP is developed in collaboration with nf-ncov-voc https://github.com/cidgoh/nf-ncov-voc as back-end genomics workflow.

Nf Ncov Voc ⭐ 5

A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.

Covid 19_sars Cov 2_corona ⭐ 5

An analysis of Covid-19 case time series around the world with projections and forecasts how case numbers might grow in the week ahead

Covid 19 Choropleth Map Uk ⭐ 5

Visualisation of the UK COVID-19 cases breakdown

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