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Search results for python rna seq

112 search results found

🗺️ MAPP is a computational method which enables identification of binding motifs for RNA-binding proteins that shape pre-mRNA processing under specific conditions.

Primerseq ⭐ 7

Primer Seek in RNA-Seq. Designs RT-PCR primers that validate alternative splicing events from RNA-Seq data.

Sargasso disambiguates mixed-species high-throughput sequencing data.

Pyfeat 2.x ⭐ 6

Biological Feature Representation Tool form the Sequences

Curare - A customizable and reproducible analysis pipeline for RNA-Seq experiments

A simple python package for doublet detection in scRNA-seq data

Bam Lorenz Coverage ⭐ 6

Generate Lorenz plots and Coverage plots directly from BAM files

CAARS: Comparative Assembly and Annotation of RNA-Seq data

Deepsplice ⭐ 6

DeepSplice: Deep Classification of Novel Splice Junctions Revealed by RNA-seq

Rnaseq_workflow ⭐ 6

snakemake workflow for bulk RNA-seq workflow using STAR-edgeR

Epitope discovery pipeline for RNA-seq

Metadatatable ⭐ 5

Work on and around an interactive metadata table for project identification

Automated and friendly RNA-seq analysis (deprecated)

Bento Seq ⭐ 5

Bootstrap Estimation Tool for RNA-Seq

Long RNA-seq analysis workflow

Utr_add_extend_gtf ⭐ 5

Provided tool will add explicit 3'UTR and extends it into a valid Ensembl GTF file. It's useful for 3'RNAseq when 3' coordinates might not be as good as you expect.

Ribo Oddr ⭐ 5

Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs

Genome_tracks ⭐ 5

A Snakemake workflow for easy visualization of genome browser tracks of aligned BAM files powered by the wrapper gtracks for the package pyGenomeTracks.

Clair3 Rna ⭐ 5

Clair3-RNA - long-read short variant caller for RNA sequencing data

SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.

Imrep.gtex ⭐ 5

Scripts and commands we used in our study : Profiling immunoglobulin repertoires across multiple human tissues by RNA Sequencing

Rediscover ⭐ 5

RNA editing discovery from NGS data.

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