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rna
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34 search results found
Graphein
⭐
932
Protein Graph Library
Rna Tools
⭐
129
🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
Xpore
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122
Identification of differential RNA modifications from nanopore direct RNA sequencing
Ga4gh Server
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95
Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
Seqfold
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66
nucleic acid folding
R2dt
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53
Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
Rhofold
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32
Open source code for RhoFold: Fast and Accurate RNA 3D Structure Prediction with Deep Learning.
Barnaba
⭐
26
Analyse Nucleic Acids Structure and Simulations with baRNAba
Rnacentral Webcode
⭐
25
RNAcentral website source code
Sequencework
⭐
22
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
Warp Rna
⭐
20
Recurrent Neural Aligner
Pipeline Nanopore Denovo Isoforms
⭐
19
Pipeline for de novo clustering of long transcriptomic reads
Eltetrado
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17
A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures
Metarna
⭐
17
Find target sites for the miRNAs in genomic sequences
Rna Science Toolbox
⭐
16
A platform to do RNA science
Eternabrain
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16
Deep learning to solve RNA design puzzles
Dnapacman
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14
waka waka
Fr3d Python
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14
Python implementation of the FR3D software for searching and annotating RNA 3D structures
Annapurna
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12
AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.
Modphred
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12
modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
Fingernat
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12
Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.
Star Seqr
⭐
9
RNA Fusion Detection and Quantification
Pseudou Bidseq
⭐
8
🧪 New pipeline for detecting pseudouridine modification on RNA (BID-seq, etc)
Mcts Rna
⭐
7
MCTS-RNA is a computational tool for solving RNA inverse folding problem with controlling the GC-content of the RNA sequence very precisely.
Pipeline Polya Ng
⭐
6
Pipeline for calling poly(A) tail lengths from nanopore direct RNA data using nanopolish
Rnaglib
⭐
6
Datasets and analysis tools for RNA 3D and 2.5D structures.
Blast Binder
⭐
6
Repo for running command line-based BLAST in Jupyter environment provided via Binder.
Rnpfind
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6
Bioinformatics tool for exploring RNA-Protein interactions
Riser
⭐
5
Biochemical-free targeting of RNA classes during direct RNA sequencing
Dima
⭐
5
A command-line tool that analyses the diversity and motifs of protein/nucleotide sequences.
Radian
⭐
5
Nanopore direct RNA basecaller
Thtools
⭐
5
A library for the analysis of toehold switch riboregulators created by the iGEM team City of London UK 2021.
Clair3 Rna
⭐
5
Clair3-RNA - long-read short variant caller for RNA sequencing data
Rediscover
⭐
5
RNA editing discovery from NGS data.
Thtools
⭐
5
A library for the analysis of toehold switch riboregulators created by the iGEM team City of London UK 2021.
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