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Search results for python population genetics

population-genetics x

14 search results found

An analysis and visualization platform for 'omics data

Grenepipe ⭐ 75

A flexible, scalable, and reproducible pipeline to automate variant calling from sequence reads.

PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

Diploshic ⭐ 47

feature-based deep learning for the identification of selective sweeps

Neural Admixture ⭐ 44

Rapid population clustering with autoencoders

Forward-time simulation in Python using fwdpp

deep learning prediction of geographic location from individual genome sequences

Nci Webtools Dceg Linkage ⭐ 20

LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. Each included application is specialized for querying and displaying unique aspects of linkage disequilibrium.

Pinpoints the mutation favored by selection

Timesweeper ⭐ 12

Python package for detecting positive selective sweeps using time-series genomics sampling data.

A tool to visualize the haplotype pattern and various information in excel.

Admixfrog ⭐ 7

Opp Op Pop Init ⭐ 6

PyPI package containing opposition learning operators and population initializers for evolutionary algorithms

Angry Moran Simulator ⭐ 5

A general game-theoretical framework to carry out scientific simulations of populations' evolution according to the Moran model 🧮

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