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Search results for python openslide

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Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch sampling and storing using OpenSlide. Patches may be stored in LMDB, HDF5 files, or to disk. It is highly recommended to fork and download this repository so that personal customisations can be made for your work.

Digipathai ⭐ 56

Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay

Deeplearning Digital Pathology ⭐ 32

Full package for applying deep learning to virtual slides.

Wsitools ⭐ 23

Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.

Labelslide ⭐ 10

LabelSlide is a slide annotation tool and label object bounding boxes in virtual slides (generally used in pathology)

Histoprep ⭐ 9

Preprocessing module for large histological images

Large_image_wheels ⭐ 8

manylinux wheel files for girder/large_image dependencies

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