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Search results for python microbiology
microbiology
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python
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16 search results found
Drep
⭐
199
Rapid comparison and dereplication of genomes
Ppanggolin
⭐
191
Build a partitioned pangenome graph from microbial genomes
Pygenomeviz
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177
A genome visualization python package for comparative genomics
Platon
⭐
93
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
Referenceseeker
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85
Rapid determination of appropriate reference genomes.
Scripts
⭐
33
Metagenomic pipeline and other general scripts used in the lab.
Ghost Tree
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23
creating hybrid-gene phylogenetic trees for diversity analyses
Phantasm
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20
PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes
Gambit
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16
A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
Hamroaster
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15
hAMRoaster is an analysis pipeline that can compare the output of nine different tools for detecting AMR genes and provide metrics of their performance
Tome
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9
A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
Mgkit
⭐
8
MGKit: Metagenomics Framework
Spiro
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7
SPIRO is a Smart Plate Imaging Robot
Gan
⭐
7
📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria
Ysmr
⭐
6
Bacterial video tracking & analysis
Guidemaker
⭐
5
GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes
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