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Search results for python metabolomics

30 search results found

Matchms ⭐ 153

Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.

In silico chemical library engine for high-accuracy chemical property prediction

Depthcharge ⭐ 47

A deep learning toolkit for mass spectrometry

CoreMS is a comprehensive mass spectrometry software framework

TidyMS: Tools for working with MS data in untargeted metabolomics

Calculation and visualization of molecular networks based on t-SNE algorithm

pyQms, generalized, fast and accurate mass spectrometry data quantification

Q2 Qemistree ⭐ 24

Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".

Nmdc Schema ⭐ 23

This repository contains the LinkML specification for the NMDC schema and the artifacts generated by LinkML.

IsoCor: Isotope Correction for mass spectrometry labeling experiments

Npyc Toolbox ⭐ 18

The nPYc-Toolbox defines objects for representing, and implements functions to manipulate and display, metabolic profiling datasets.

Targeted metabolomics with Python

Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.

Implementation of PLS-DA and OPLS-DA for high dimensional data, like MS in metabolomics.

Workflow for LC-MS feature analysis and spatial mapping

A programmable and modular LC/MS simulator in Python

Foodbiomarkerontology ⭐ 12

🚀 Food-Biomarker Ontology defines the relationships between foods and their associated metabolites (biomarkers) through a formal ontology

Forum Diseaseschem ⭐ 12

A Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases.

a python package for molecular formula analysis in MS-based small molecule studies

(Multiblock) Partial Least Squares Regression for Python

Ms2ldaviz ⭐ 10

Substructural discovery in untargeted metabolomics data using LDA topic modelling.

BEAMSpy - Birmingham mEtabolite Annotation for Mass Spectrometry (Python Package)

Metabolomics And Dereplication By Two-dimensional Experiments - MADByTE NMR Metabolomics Platform

The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for archival of Mass Spectrometry (MS) and Nuclear Magnetic Resonance (NMR) experimental data.

Package for analyzing MS with Python

Python package for the high-throughput nontargeted metabolite fingerprinting of nominal mass direct injection mass spectrometry directly from mzML files.

A Python 3 implementation of orthogonal projection to latent structures

Biodendro ⭐ 6

A package to cluster and visualise MS/MS spectral data

Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data

Pf_1600_datanote ⭐ 5

This repository gathers scripts used for the paper "Open and re-usable annotated mass spectrometry dataset of a chemodiverse collection of 1,600 plant extracts."

Rapid Qc Ms ⭐ 5

Realtime quality control for mass spectrometry data acquisition

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