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Search results for python medical image processing

medical-image-processing x

105 search results found

Monai ⭐ 5,010

AI Toolkit for Healthcare Imaging

Torchio ⭐ 1,904

Medical imaging toolkit for deep learning

Deep Learning Toolkit for Medical Image Analysis

Medicaldetectiontoolkit ⭐ 1,249

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

Niftynet ⭐ 1,170

[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy

Medicalzoopytorch ⭐ 896

A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation

Lungmask ⭐ 576

Automated lung segmentation in CT

Pytorch Medical Segmentation ⭐ 536

This repository is an unoffical PyTorch implementation of Medical segmentation in 2D and 3D.

Bcdu Net ⭐ 435

BCDU-Net : Medical Image Segmentation

Histomicstk ⭐ 350

A Python toolkit for pathology image analysis algorithms.

A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

Wama_medic ⭐ 193

A simple-to-use yet function-rich medical image processing toolbox

Cvpr 2023 Papers ⭐ 185

CVPR 2023 Papers: Dive into advanced research presented at the leading computer vision conference. Keep up to date with the latest developments in computer vision and deep learning. Code included. A star in the development of visual intelligence!

Open Solution Data Science Bowl 2018 ⭐ 158

Open solution to the Data Science Bowl 2018

Nonrigid image registration using multi-scale 3D convolutional neural networks

Miccai Lits2017 ⭐ 137

liver segmentation using deep learning

Kaapana ⭐ 135

Kaapana (from the hawaiian word kaʻāpana, meaning “distributor” or “part”) is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging.

Rt Utils ⭐ 135

A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.

Livianet ⭐ 133

This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"

Neurdicom ⭐ 112

RESTful PACS server with plugins

Hyperdensenet ⭐ 106

This repository contains the code of HyperDenseNet, a hyper-densely connected CNN to segment medical images in multi-modal image scenarios.

3d Medical Segmentation Gan ⭐ 81

3D Liver Segmentation with GAN

Retina Features ⭐ 80

Project for segmentation of blood vessels, microaneurysm and hardexudates in fundus images.

MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) data.

Coronary Artery Tracking Via 3d Cnn Classification ⭐ 71

The PyTorch re-implement of a 3D CNN Tracker to extract coronary artery centerlines with state-of-the-art (SOTA) performance. (paper: 'Coronary artery centerline extraction in cardiac CT angiography using a CNN-based orientation classiﬁer')

Dicom_rt_and_images_to_mask ⭐ 70

Various utilities created to help with the interpretation of DICOM images and DICOM RT Structures to NumPy masks and Simple-ITK handles/Nifti images. Some necessary steps for deep learning

Optic Disc Unet ⭐ 62

Attention Unet model with post process for retina optic disc segmention

Modelhub ⭐ 61

A collection of deep learning models with a unified API.

ADN: Artifact Disentanglement Network for Unsupervised Metal Artifact Reduction

Lung_nodule_detector ⭐ 53

lung nodule detector using 3d resnet using focal loss

Rivuletpy ⭐ 50

Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.

Semidensenet ⭐ 48

Repository containing the code of one of the networks that we employed in the iSEG Grand MICCAI Challenge 2017, infant brain segmentation.

Covid19.miscnn ⭐ 48

Robust Chest CT Image Segmentation of COVID-19 Lung Infection based on limited data

[ECCV2022] The official implementation of Cross-modal Prototype Driven Network for Radiology Report Generation

Medicalimagesegmentation ⭐ 45

This repository aims at containing all the code employed at LIVIA to segment medical images. Mainly, our research focuses on bringind the expertise in deep learning and optimization techniques to the medical image analysis domain.

Rcs Yolo ⭐ 43

Official implementation of "RCS-YOLO: A Fast and High-Accuracy Object Detector for Brain Tumor Detection".

Mammography_metarepository ⭐ 43

Meta-repository of screening mammography classifiers

Medvision ⭐ 40

Medical Image Vision Operators, such as RoIAlign, DCNv1, DCNv2 and NMS for both 2/3D images.

Magic Vnet ⭐ 40

VNet for 3d volume segmentation

Itktubetk ⭐ 39

TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, Inc.

Focuslitenn ⭐ 35

Official PyTorch and MATLAB implementations of our MICCAI 2020 paper "FocusLiteNN: High Efficiency Focus Quality Assessment for Digital Pathology"

Brain Tumor Detection In 3d Mris Using Dcgan ⭐ 31

Using DCGAN for segmenting brain tumors from brain image scans

Medical Image Segmentation Benchmarks ⭐ 30

A Pytorch implement of medical image segmentation U-shape architecture benchmarks

Hyperdensenet_pytorch ⭐ 29

Pytorch version of the HyperDenseNet deep neural network for multi-modal image segmentation

Covid Caps ⭐ 29

A Capsule Network-based framework for identification of COVID-19 cases from chest X-ray Images

Repository containing the source code of the IVD-Net segmentation network that we proposed for the MICCAI 2018 IVD segmentation challenge.

This repository holds the code framework used in the paper Reg R-CNN: Lesion Detection and Grading under Noisy Labels. It is a fork of MIC-DKFZ/medicaldetectiontoolkit with regression capabilites.

Thyroid Us ⭐ 28

Evaluation of Thyroid Nodules Seen on Ultrasound Using Multi-task Deep Convolutional Neural Network (CNN)

Simpleitk Snap ⭐ 27

A qt-based 3D data visualization tool.

Miccai19 Medvqa ⭐ 27

AIOZ AI - Overcoming Data Limitation in Medical Visual Question Answering

Kerasfuse ⭐ 27

KerasFuse is a Python library that combines the power of TensorFlow and Keras with various computer vision techniques for medical image analysis tasks. It provides a collection of modules and functions to facilitate the development of deep learning models in TensorFlow Keras for tasks such as image segmentation, classification, and more.

Pooya Mohammadi ⭐ 27

This is Pooya Mohammadi, Open Source Enthusiast, AI Developer & Researcher

Pytorch Dicom Classification ⭐ 26

A general framework to analyze medical images saved as .dicom files

Dcemri.jl ⭐ 26

DCE MRI analysis in Julia

Kits19.miscnn ⭐ 25

Kidney Tumor Segmentation Challenge 2019: MIScnn - 3D Residual U-Net

Xai_thyroid ⭐ 24

All Classification and Object Detection XAI methods (CAM-based, backpropagation-based, perturbation-based, statistic-based) for thyroid cancer ultrasound images

Patho Gan ⭐ 24

Patho-GAN: interpretation + medical data augmentation. Code for paper work "Explainable Diabetic Retinopathy Detection and Retinal Image Generation"

Miccai21_mmq ⭐ 23

Multiple Meta-model Quantifying for Medical Visual Question Answering

Official Pytorch Code base for "CMUNeXt: An Efficient Medical Image Segmentation Network based on Large Kernel and Skip Fusion"

Image_recognition_webgui ⭐ 22

✨基于 3D 卷积神经网络(CNN)的阿尔兹海默智能诊断 Web 应用 Alzheimer's Intelligent Diagnosis Web Application based on 3D Convolutional Neural Network and the ADNI Dataset ✨ (with README in English) 🚩：图像识别可视化界面，快速部署深度学习模型为网页应用，Web预测系统，决策支持系统(DSS)，图

Transoar ⭐ 22

A 3D medical Detection Transformer library. Papers accepted @ MIDL & MELBA.

Cst Yolo ⭐ 22

Official implementation of "CST-YOLO: A Novel Method for Blood Cell Detection Based on Improved YOLOv7 and CNN-Swin Transformer".

Miniviewer ⭐ 20

A little viewer for visualizing medical images and respective labels

Autoradiomics ⭐ 19

The easiest tool for experimenting with radiomics features.

Cardiacsegmentationpropagation ⭐ 19

Code for cardiac segmentation

Lungtumormask ⭐ 19

Automatic end-to-end lung tumor segmentation from CT images.

Keras_medicalimgai ⭐ 19

Xboundformer ⭐ 18

[TMI 2023] XBound-Former: Toward Cross-scale Boundary Modeling in Transformers

Private Ml For Health ⭐ 18

Dopamine: Differentially Private Federated Learning on Medical Data (AAAI - PPAI)

Bgf Yolo ⭐ 18

Official implementation of "BGF-YOLO: Enhanced YOLOv8 with Multiscale Attentional Feature Fusion for Brain Tumor Detection".

Python binding for the G'MIC Image Processing Framework

Fatsegnet ⭐ 16

Deep CNN for Abdominal Adipose Tissue Segmentation on Dixon MRI

Segretino ⭐ 16

An implementation of the research paper "Retina Blood Vessel Segmentation Using A U-Net Based Convolutional Neural Network"

TextSCF: LLM-Enhanced Image Registration Model

Brats23 Tumors Segmentation ⭐ 15

Brain tumors segmentation on 3D MRI images. The model has been trained on BratTS20 and BraTS21 datasets, and now working with BraTS23.

Cardiac Motion ⭐ 14

[STACOM-MICCAI 2019] Deep Learning Registration for Cardiac Motion Tracking

Pneumonia_detection ⭐ 14

A Flask Pneumonia Detection web app from chest X-Ray Images using CNN

Artifactreduction ⭐ 13

Fixed some common artifacts in CT images.

U-Net for biomedical image segmentation

Chromosome Segmentation ⭐ 11

Chromosome image segmentation using Keras

Ietk Ret ⭐ 11

Re-colorize and enhance color fundus images. Image Enhancement Toolkit for Retinal Fundus Images (IETK-Ret).

Lungsegmentation ⭐ 10

This was my research project at IIT Bombay on Lung Segmentation from Chest X-Rays Images

Chainer Skin Lesion Detector ⭐ 10

Skin Lesion Detector using HAM10000 dataset with Chainer / ChainerCV

Easymedics ⭐ 9

A GUI tool to interact with X-RAY, MRI and CT scans.

Capsnetslaseg ⭐ 9

Capsule Networks and Convolutional Neural Networks for the Automated Segmentation of Left Atrium in Cardiac MRI

Histoprep ⭐ 9

Preprocessing module for large histological images

The code for our newly accepted paper in MICCAI 2023: "Instructive Feature Enhancement for Dichotomous Medical Image Segmentation."

Machine Learning Based Classification Of Schizophrenic And Healthy Control Using Resting State Fmri ⭐ 8

My Bachelor's Thesis on Automated Classification of Schizophrenic from Healthy subjects by analyzing Resting State Networks using Machine Learning, Signal Processing and Computer Vision algorithms

Cup And Disc Segmentation For Glaucoma Detection Cdr Calculation ⭐ 8

An adaptive threshold based algorithm for optic disc and cup segmentation in fundus images

Lung_nodule_classifier ⭐ 8

lung nodule classifier for 9 attribute

Cancerous_cells_scans_processing ⭐ 7

Predict survival time from PET scans

Code for ICASSP 2024 paper"Embedded Feature Similarity Optimization with Specific Parameter Initialization for 2D/3D Registration"

Official implementation of "ASF-YOLO: A Novel YOLO Model with Attentional Scale Sequence Fusion for Cell Instance Segmentation".

Hardware Web Ui ⭐ 7

A graphical user interface (GUI) that is built on the Web and used to communicate with the Breast Cancer Detection Neural Network.

IEEE TNNLS | GeSeNet: A General Semantic-guided Network with Couple Mask Ensemble for Medical Image Fusion

Orientation Adjust Tool ⭐ 6

A tool for detecting and adjusting orientation of 2D cardiac MR images

Banding Pattern Extraction ⭐ 6

Banding pattern extraction, and banding pattern segmentation mask generation for stained banded chromosome images.

3d_medical_imaging ⭐ 6

Segmentation of Blood Vessels from 3D Medical Image

Retina Optic Disc Detector ⭐ 6

Optic disc detection in a retina image using a fully connected convolutional neural network.

Medical Image Registration And Pre Processing ⭐ 5

Register images to MNI152 Template and perform pre-processing

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