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Search results for python imaging

47 search results found

Itkwidgets ⭐ 571

An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.

Operator Discretization Library https://odlgroup.github.io/odl/

Pythonfromspace ⭐ 298

Python Examples for Remote Sensing

Starfish ⭐ 220

starfish: unified pipelines for image-based transcriptomics

Floorplantoblender3d ⭐ 212

Create 3d rooms in blender from floorplans.

Itk Wasm ⭐ 172

High performance spatial analysis in a web browser, Node.js, and across programming languages and hardware architectures

Cellfinder ⭐ 170

Automated 3D cell detection in very large images

Deep and Machine Learning for Microscopy

Kaapana ⭐ 135

Kaapana (from the hawaiian word kaʻāpana, meaning “distributor” or “part”) is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging.

Fusilli ⭐ 120

A Python package housing a collection of deep-learning multi-modal data fusion method pipelines! From data loading, to training, to evaluation - fusilli's got you covered 🌸

Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.

Bidscoin ⭐ 110

BIDScoin converts your source-level neuroimaging data to BIDS

A python package for Abel and inverse Abel transforms

MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) data.

Cytoself ⭐ 58

Self-supervised models for encoding protein localization patterns from microscopy images

Seismic imaging at local, regional, and global scale

Img2texture ⭐ 51

CLI for converting images to seamless tiles

Napari Hub ⭐ 46

Discover, install, and share napari plugins

Code for running a multicolor structured illumination microscopy (SIM) experiment using a DLP6500 digital micromirror device (DMD) and performing SIM reconstruction.

Colour Analysis ⭐ 34

Image analysis tools based on Colour and Vispy

2d And 3d Deep Autoencoder ⭐ 34

Convolutional AutoEncoder application on MRI images

Automatic Cell Counter ⭐ 26

A GUI based on napari for counting cells automatically in cell migration experiments

Multiscale Spatial Image ⭐ 25

Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.

Framework for storing, visualizing, and processing Universal Spectroscopic and Imaging Data (USID)

Digital Imaging of Root Traits: Extract trait measurements from images of monocot and dicot roots.

nii2dcm: NIfTI to DICOM creation with Python

Miqa Phase1 ⭐ 19

A web application for medical imaging quality assurance

Official Website for Event-based Synthetic Aperture Imaging: https://dvs-whu.cn/projects/esai/

Noise Correction Algorithm for sCMOS cameras

Thumbor Wand Engine ⭐ 13

🧙‍♂️ ImageMagick engine for Thumbor

Ngff Zarr ⭐ 12

A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.

Gamma Ai ⭐ 11

Development of machine-learning-based tools for Compton and pair telescopes

Python library unifying Positron Emission Particle Tracking (PEPT) research, including tracking, simulation, data analysis and visualisation tools.

Colour Analysis Three.js ⭐ 10

Image analysis tools based on Colour and Three.js

First order ray-optical system simulation

Colonyscanalyser ⭐ 8

An image analysis tool for measuring microorganism colony growth

Mantidimaging ⭐ 8

Graphical toolkit for neutron imaging.

Attention Cnn Ms Segmentation ⭐ 8

An attention-based Fully Convolutional Densenet for Multiple Sclerosis lesion segmentation from FLAIR MRI

ADJUST: A Dictionary-Based Joint Reconstruction and Unmixing Method for Spectral Tomography

SINTEF SilCam acquisition, processing and plotting

Radio-Frequency Ultrasound Localization Microscopy

Chaotic Sensing (ChaoS)

SNOW: caSa pythoN self-calibratiOn frameWork

Compactionanalyzer ⭐ 6

Evaluates the fiber orientation and intensity around cells that compact collagen tissue as measure of contractile strength.

Codedapertures ⭐ 5

a python package for generating coded aperture patterns

Unifusion ⭐ 5

This is the implementation for the paper titled "UNIFusion: A Lightweight Unified Image Fusion Network".

Multisero ⭐ 5

serological measurements from multiplexed ELISA assays

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