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Search results for python gene expression
gene-expression
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21 search results found
Awesome Single Cell
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2,784
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Enformer Pytorch
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359
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
D Gex
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117
Deep learning for gene expression inference
Scope
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56
Fast visualization tool for large-scale and high dimensional single-cell data
Tf Bind Transformer
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45
A repository with exploration into using transformers to predict DNA ↔ transcription factor binding
Scnanogps
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29
Single cell Nanopore sequencing data for Genotype and Phenotype
Cobrame
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29
A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
Chromoformer
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24
The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
Go_enrichment
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23
Transcripts annotation and GO enrichment Fisher tests
Gedfn
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19
GEDFN: Graph-Embedded Deep Feedforward Network
Rnaseq Pipeline
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18
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
Gne
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13
This repository contains the tensorflow implementation of "GNE: A deep learning framework for gene network inference by aggregating biological information"
Mybmonday
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10
MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional background to the #MYB_Monday tweets
Deep Learning Gene Expression
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10
Deep learning methods for feature selection in gene expression autism data.
Pyreqtl
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9
A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.
Rna Seq Vae
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9
Synthetic gene expression data generation using Variational Auto-Encoder
Bgee_pipeline
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8
Source code of the Bgee pipeline used to build the Bgee database
Genome_integration
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8
MR-link and genome integration. genome_integration is a repository for the analysis of genomic data. Specifically, the repository implements the causal inference method MR-link, as well as other Mendelian randomization methods.
Gc Splem
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8
Survival Prediction for Gastric Cancer via Multimodal Learning of Whole Slide Images and Gene Expression -- BIBM 2022
Rna Seek
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8
A comprehensive quality-control and quantification RNA-seq pipeline
Orthomap
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6
orthomap is a python package to extract orthologous maps (in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Orthomap results (gene ages per orthogroup) can be further used to calculate weigthed expression data (transcriptome evolutionary index) from scRNA sequencing objects.
Modulector
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5
An open platform which provides information about miRNAs and genes from different popular databases
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