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Search results for python genbank
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19 search results found
Ncbi Genome Download
⭐
784
Scripts to download genomes from the NCBI FTP servers
Dnafeaturesviewer
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500
👁️ Python library to plot DNA sequence features (e.g. from Genbank files)
Pygenomeviz
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177
A genome visualization python package for comparative genomics
Pydna
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140
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
Ganon
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73
ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
Mpox
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37
Nextstrain build for mpox virus
Ncov Ingest
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34
A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
Multisub
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28
Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.
Vapid
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27
VAPiD: Viral Annotation and Identification Pipeline
Seqsender
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24
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
Barcodefinder
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20
all-in-one solution for discovering novel DNA barcode
Goodbye Genbank
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12
A Python package for Biopython that gives feature annotations from GenBank records a new and better life
Cazy_webscraper
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10
Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
Tostadas
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10
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
Genmine
⭐
7
GenBank Record downloader for taxonomists
Gbkviz
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7
Easy-to-use web application for visualization and comparison of genomes in Genbank file
Lava
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6
LAVA: Longitudinal Analysis of Viral Alleles
Metashot
⭐
5
MetaShot (Metagenomics Shotgun) is a complete pipeline designed for the taxonomic classification of the human microbiota members. In MetaShot, third party tools and new developed Python and Bash scripts are integrated to analyze paired-end (PE) Illumina sequences, offering an automated procedure covering all the analysis steps from raw data management to taxonomic profiling. It is designed to analyze both DNA-Seq and RNA-Seq data.
Genbankpy
⭐
5
Tools to download, parse and filter GenBank files
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