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4 search results found

Circle Map ⭐ 39

A method for circular DNA detection based on probabilistic mapping of ultrashort reads

Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.

Ampliconreconstructorom ⭐ 14

Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data

Tool used to quantify extrachromosomal DNA (ecDNA) in metaphase images stained with DAPI and FISH probes.

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