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Search results for python comparative genomics

comparative-genomics x

28 search results found

Python library to facilitate genome assembly, annotation, and comparative genomics

Pycirclize ⭐ 476

Circular visualization in Python (Circos Plot, Chord Diagram)

An analysis and visualization platform for 'omics data

Funannotate ⭐ 261

Eukaryotic Genome Annotation Pipeline

Ppanggolin ⭐ 191

Build a partitioned pangenome graph from microbial genomes

Pygenomeviz ⭐ 177

A genome visualization python package for comparative genomics

Recentrifuge ⭐ 83

Recentrifuge: robust comparative analysis and contamination removal for metagenomics

Quota Alignment ⭐ 44

Guided synteny alignment between duplicated genomes (within specified quota constraint)

Aniclustermap ⭐ 38

A tool for drawing ANI clustermap between all-vs-all microbial genomes

zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)

Cogclassifier ⭐ 27

A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category

Comparison of Hi-C Experiments using Structural Similarity.

Taxon-aware analysis of clustered protein sequences

A toolkit for prokaryotic comparative genomics

A tool for analysis of assembly graphs

Mgcplotter ⭐ 20

Microbial Genome Circular plotting tool for comparative genomics using Circos

a versatile toolkit for processing and analyzing diverse types of sequence data

CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies

Workflow for identifying and classifying homologous gene/protein sequences

Plot_genome_align_fig ⭐ 10

Plot genome alignment figure using progressiveMauve & genoPlotR

FastOMA is a scalable software package to infer orthology relationship.

Notebooks ⭐ 8

MGnify documentation and Jupyter Lab notebooks to support downstream analysis of MGnify data (EMBL-EBI's metagenomics platform)

Fastdtlmapper ⭐ 7

Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method

JAMIRA is a reproducible Workflow for Integrative Exploration of Genomic Features of prokariotes

Easy-to-use web application for visualization and comparison of genomes in Genbank file

CAARS: Comparative Assembly and Annotation of RNA-Seq data

Fishcomparativeatlas ⭐ 6

FishComparativeAtlas is a pipeline to trace the evolution of sister duplicated chromosomes derived from whole genome duplication in teleost genomes.

Buscoorthophylo ⭐ 5

Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs

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