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Search results for python cell biology

16 search results found

Deepcell Tf ⭐ 373

Deep Learning Library for Single Cell Analysis

Usiigaci ⭐ 187

Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning

Deepliif ⭐ 126

Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23]

(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"

Pytorch_integrated_cell ⭐ 36

Integrated Cell project implemented in pytorch

Deepcycle ⭐ 19

Cell cycle inference in single-cell RNA-seq

Cellshape ⭐ 17

3D shape analysis using deep learning

Cellx Predict ⭐ 15

Explainable AI model of cell behavior

U Unwrap3d ⭐ 12

Transform 3D cell surfaces into different representations including topographic maps, 3D spheres, and 2D images for doing optimized quantification, data analysis and machine learning.

Automated Cell Toolkit

Track single cells and profile the cell cycle with PCNA fluorescence images

A general Python framework for using hidden Markov models on binary trees or cell lineage trees.

Ml Cellsignal ⭐ 7

CellSignal (rxrx.ai) - NEURIPS 2019 COMPETITION

Language for describing whole-cell models as reaction networks

Quantifying 2D cell shape and epithelial tissue dynamics

Rule-based modeling for whole-cell models.

Wc_model_gen ⭐ 5

Framework for systematically and scalably designing whole-cell models from large datasets

Deep Learning Based Cell Segmentation

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