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Search results for python biomedical data science

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11 search results found

Unet Zoo ⭐ 262

A collection of UNet and hybrid architectures in PyTorch for 2D and 3D Biomedical Image segmentation

Im2im Uq ⭐ 29

Image-to-image regression with uncertainty quantification in PyTorch. Take any dataset and train a model to regress images to images with rigorous, distribution-free uncertainty quantification.

Atacseq_pipeline ⭐ 25

Ultimate ATAC-seq Data Processing & Quantification Workflow. A Snakemake implementation of the BSF's ATAC-seq Data Processing Pipeline extended by downstream quantification and annotation steps using bash and Python.

A Python library for biomedical statistical shape and appearance modelling.

Oct Retinal Layer Segmenter ⭐ 18

Adversarial Relation Classification ⭐ 16

Unsupervised domain adaptation method for relation extraction

Pubmed Best Match ⭐ 15

Machine-learning based pipeline relying on LambdaMART currently used in PubMed for relevance (Best Match) searches

Gradingkneeoa ⭐ 15

Knee Osteoarthritis Analysis with X-ray Images using CNN

Enrichment_analysis ⭐ 10

A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, and GSEApy.

Knowledgediscovery ⭐ 9

Analysis code for knowledge discovery project

Genome_tracks ⭐ 5

A Snakemake workflow for easy visualization of genome browser tracks of aligned BAM files powered by the wrapper gtracks for the package pyGenomeTracks.

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