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Search results for python bids apps

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Bidscoin ⭐ 110

BIDScoin converts your source-level neuroimaging data to BIDS

Dmriprep ⭐ 61

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

Connectomemapper3 ⭐ 39

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

Freesurfer ⭐ 35

BIDS app wrapping recon-all from FreeSurfer

Preprocessing of arterial spin labeling (ASL) data

Hcppipelines ⭐ 30

A BIDS App for minimal preprocessing using the HCP Pipelines

This an example app that can serve as a template.

BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)

Hyperalignment ⭐ 12

Hyperalignment is a functional alignment method that aligns subjects' brain data in a high-dimensional space of voxels/features.

Predicts brain age, based on data from Freesurfer 5.3

Brainsuite ⭐ 7

BrainSuite's structural, diffusion, and functional MRI processing pipelines with QC functionalities.

PCP Quality Assessment Protocol

Rs_signal_extract ⭐ 6

BIDS App for resting state signal extraction using nilearn.

Bidsmreye ⭐ 6

BIDS app using deepMReye to decode eye motion for fMRI time series data.

Infant Abcd Bids Pipeline ⭐ 6

Human infant pipeline, based on abcd-hcp-pipeline, to process fMRI data.

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