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Search results for python alphafold2

13 search results found

Openfold ⭐ 2,235

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

Fastfold ⭐ 485

Optimizing AlphaFold Training and Inference on GPU Clusters

Opencomplex ⭐ 130

Trainable PyTorch framework for developing protein, RNA and complex models.

Official implementation of SaProt.

Parallelfold ⭐ 91

Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures

Af2complex ⭐ 72

Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.

Revisiting Plms ⭐ 31

Exploring Evolution-aware & free protein language models as protein function predictors

Aws Rosettafold ⭐ 18

Infrastructure template and Jupyter notebooks for running RoseTTAFold on AWS Batch.

A tool for predicting the effects of missense mutations on protein stability changes upon missense mutation using protein sequence only. PROST uses colab AlhpaFold2 for the prediction of pdb struture from FASTA sequence.

Alphafold Stepbystep ⭐ 7

Run AlphaFold2 (and multimer) step by step

Alphacharges ⭐ 6

𝛂Charges: A tool for the quick calculation of partial atomic charges for protein structures from AlphaFoldDB

Alphacutter ⭐ 6

This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.

GUI for running jobs with a local installation of AlphaFold2. Supports submission to queuing systems.

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