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15 search results found

Read coverage calculator for metagenomics

Pysamstats ⭐ 141

A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.

GenMap - Fast and Exact Computation of Genome Mappability

Primalscheme ⭐ 56

a tool for designing primer panels for multiplex PCR.

Is_mapper ⭐ 26

IS mapping software

1000 Genomes Genetic Maps ⭐ 23

Genetic maps interpolated to sites in the 1000 Genomes project

Samchain ⭐ 18

Deepmased ⭐ 13

Deep learning for Metagenome Assembly Error Detection

Spydrpick ⭐ 9

SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.

Snp Mutator ⭐ 9

Generate mutated sequence files from a reference genome.

Python NGS Repository

Genomicscores ⭐ 8

Provide support to store and retrieve genomic scores associated to nucleotide positions along a genome

pybio is a comprehensive Python framework designed to streamline genomics operations. It offers a direct interface to Ensembl genome assemblies and annotations, while also accommodating custom genomes via FASTA/GTF inputs.

Sanefalcon ⭐ 7

SANEFALCON (Single reAds Nucleosome-basEd FetAL fraCtiON): Calculating the fetal fraction for noninvasive prenatal testing based on genome-wide nucleosome profiles.

Goontools ⭐ 5

POC: toolkit for GOON (genome json) files

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