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Search results for population genomics
population-genomics
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27 search results found
Vcfr
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225
Tools to work with variant call format files
Ngsld
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33
Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
Relernn
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33
Recombination Landscape Estimation using Recurrent Neural Networks
Popdel
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32
Population-wide Deletion Calling
Stratag
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22
strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
Hierfstat
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22
the hierfstat package
Imagene
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20
Estimation of population genetic parameters using deep learning
Ngsf
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18
Estimation of per-individual inbreeding coefficients under a probabilistic framework
Pypop
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17
PyPop: Python for Population Genomics
Rhierbaps
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17
rhierbaps: R implementation of hierBAPS
Rna Seq Pop
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17
Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
Betascan
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16
Genome-wide scan for balancing selection using beta statistic
Assignpop
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15
Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution. 2018;9:439–446.
Ngsf Hmm
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13
Estimation of per-individual inbreeding tracts under a probabilistic framework
Dadi Cli
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13
Automated and distributed population genetic model inference from allele frequency spectra
Timesweeper
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12
Python package for detecting positive selective sweeps using time-series genomics sampling data.
Genomicscourse
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11
For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics
Starmie
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10
starmie: plotting and inference for population structure models 🌟
Ngsdist
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9
Estimation of pairwise distances under a probabilistic framework
Coimbra Et Al 2021_currbiol
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9
Code used to analyse WGS data of giraffe in Coimbra et al. 2021 (https://doi.org/10.1016/j.cub.2021.04.033)
Kpax3.jl
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8
Bayesian bi-clustering of categorical data
Happe
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8
A tool to visualize the haplotype pattern and various information in excel.
Course R Mol Data
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8
R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.
Popgen
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7
Small scripts for population genetics analysis
Sstar
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6
Detecting Archaic Introgression from Population Genetic Data with S*
Geno4sd
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6
An python omics data toolkit for the analysis across biological scales
Phd_thesis
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5
Presented here are the tools and strategies implemented for short-read SV discovery (Chapter 3), a population genomics study (Chapter 4) and genome graph construction (Chapter 5).
Related Searches
R Population Genomics (9)
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Genome Population Genomics (4)
1-27 of 27 search results
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