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Search results for step pipeline

146 search results found

Rspec Junit Example ⭐ 10

An example pipeline that collects JUnit test failures and annotates a Buildkite build

Block Step Example ⭐ 10

An example of how to include block steps with form fields in your pipeline

Rmghc 2018 ⭐ 10

Nextflow Workshop at Rocky Mountain Genomics HackCon 2018

Fullstack Jenkins ⭐ 10

Simple Docker Jenkins Image for PHP 7.2

Bsmooth Align ⭐ 10

Alignment of bisulfite sequence reads and tabulation of read-level methylation measurements

Modern Pipelines ⭐ 9

Step by step documentation on building modern CI/CD Pipelines with Kubernetes and Jenkins

Npg_seq_pipeline ⭐ 9

Processing and analysis of data coming from Illumina sequencing machines

Spark Pipeline ⭐ 9

Example End-to-End Data Pipeline with Apache Spark from Data Analysis to Data Product

Buildkite Graph ⭐ 9

A graph-based generator for Buildkite pipelines

Jenkins Steps Override ⭐ 8

Override Jenkins Pipeline steps for local development

Genotype_imputation_pipeline ⭐ 8

Final version of the pipeline for processing TOPMED and other dbGaP datasets, includes: automatic identification of reference genome build and selection of correct chain file, mapping to GRCh37 reference build, initial quality control, ancestry analysis, post-ancestry quality control, phasing, imputation, post-imputation quality control.

Command line tool for data archiving and processing

Nix Buildkite ⭐ 8

Take a Nix job description and turn it into separate Buildkite steps with dependencies

Demo Beam Summit 2018 ⭐ 8

Python Streaming Pipelines with Beam on Flink - Demo

Jenkins Pipeline Steps ⭐ 8

A collection of build steps for use with Jenkins pipelines

Bgee_pipeline ⭐ 8

Source code of the Bgee pipeline used to build the Bgee database

Dada2_guidelines ⭐ 8

A repository with a general dada2 pipeline for amplicon processing

Genetics Colocalisation ⭐ 8

Colocalisation pipeline for Open Targets Genetics

Elife Jenkins Workflow Libs ⭐ 7

Common steps used in eLife's Jenkins Pipelines

Pneumatic Pipelines ⭐ 7

Pipelines enhancer

Interpret all the models - a genetic optimization approach to model agnostic black box explanations based on MAGIX.

Bitflow4j ⭐ 7

Java adaptation of Bitflow: A lightweight framework for real-time processing of streamed time series data

A simple Javadoc-style XProc API documentation generator written in XProc and XSLT 2.0

Pipeline implementation for PHP

Virusscan ⭐ 7

VirusScan Pipeline

Face Recognition Pipeline ⭐ 7

Face recognition visualization using OpenCV and dlib.

Drone Example ⭐ 7

A Drone CI/CD example for single machine.

Bookstore ⭐ 7

Spring Boot Project deployed with Jenkins CICD pipeline on OpenShift

Jenkins Google Chat Notification ⭐ 7

Jenkins pipeline library to send messages to Google Chat

Containers As Steps ⭐ 7

A workshop to guide you through the creation of containers as steps in a CI/CD pipeline.

Tplworkflow ⭐ 7

TPL based workflow library for .NET Standard.

Docker Logstash Http Debug ⭐ 7

A small docker image to help on coding pipelines for Logstash

Nf Phdcourse19 ⭐ 7

Nextflow training material for CRG PhD course 2019

Qtim_preprocessor ⭐ 6

Resources and pipelines used for pre-processing medical imaging data at the Quantitative Tumor Imaging Lab at the Martinos Center (MIT/HST). Includes Docker resources.

Concourse Demo ⭐ 6

A simple Concourse pipeline that demonstrates a basic workflow: test, build and deploy.

Mabl Integration Plugin ⭐ 6

build steps to launch and report on mabl tests

Rnaseq_workflow ⭐ 6

snakemake workflow for bulk RNA-seq workflow using STAR-edgeR

Batch_pipeline ⭐ 6

Example workflows for a multi-step array job on AWS Batch

Learn Kubeflow ⭐ 6

Productive ⭐ 6

Concurrent Step Plugin ⭐ 6

Jenkins plugin to use utils in Java concurrent package.

Emerlin_casa_pipeline ⭐ 5

This is CASA eMERLIN pipeline to calibrate data from the e-MERLIN array. Please fork the repository before making any changes and read the Coding Practices page in the wiki. Please add issues with the pipeline in the issues tab.

Codefresh ⭐ 5

Catalog of reusable Codefresh pipelines, pipeline specs, and pipeline shared steps.

Capillary ⭐ 5

Drone Ci Testing ⭐ 5

Repository with Drone CI Examples

Dsdevent1 ⭐ 5

Data Science Delhi

Processing 10X，Drop-seq and inDrop RNA-Seq dataset.

Openfaas Transcode ⭐ 5

OpenFaaS transcode pipeline

Sfdx Bitbucketpipeline ⭐ 5

Sample Bitbucket Pipeline for SFDX

Jenkins Pv Pipeline Library ⭐ 5

pro!vision Jenkins pipeline library for CI/CD

Simple Ml Pipeline ⭐ 5

Demonstrates machine learning pipeline for wrangling, training, predicting, and evaluating.

Slr Superscaffolder ⭐ 5

A scaffold assemble pipeline for stLFR reads.

Code for statistical binning and related scripts

Awsmegatests ⭐ 5

CloudFormation templates to setup the aws megatests necessary cloud infrastructure

Pipeline workflow for PHP

Rails Parallel Example ⭐ 5

An example of how to run Rails CI and test steps in parallel with Buildkite

Workshop Pipelines Done Right ⭐ 5

Create a basic pipeline following 6 Continuous Delivery best practices

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