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Search results for pipeline slurm
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25 search results found
Nextflow
⭐
2,447
A DSL for data-driven computational pipelines
Toil
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860
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
Juicer
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313
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Torchx
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275
TorchX is a universal job launcher for PyTorch applications. TorchX is designed to have fast iteration time for training/research and support for E2E production ML pipelines when you're ready.
Drake Examples
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58
Example workflows for the drake R package
Ensembl Hive
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50
EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
Slurm Pipeline
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47
A Python class for scheduling SLURM jobs
Soopervisor
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42
☁️ Export Ploomber pipelines to Kubernetes (Argo), Airflow, AWS Batch, SLURM, and Kubeflow.
Pipelines Nextflow
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41
A set of workflows written in Nextflow for Genome Annotation.
Jobschedulers.jl
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37
A Julia-based job scheduler and workload manager inspired by Slurm, PBS and Crontab.
Wochenende
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30
Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3
Covalent Slurm Plugin
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26
Executor plugin interfacing Covalent with Slurm
Maliampi
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19
Maximum Likelihood Amplicon Pipeline
Ngspipe2go
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19
a set of NGS pipelines
Rnaseq Pipeline
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18
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
Poretally
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15
Benchmark MinION assembler pipelines and publish your results in a heartbeat!
Graphtyper Pipelines
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13
Recommended Graphtyper pipelines
Pipelines
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11
Variant Calling Pipeline
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11
HPC based pipelines for variant calling using GATK
Jenlib
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10
Jenlib is a shared library offering various helpers and abstractions for Jenkins CI instances.
Bioluigi
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9
Reusable and maintained Luigi tasks to incorporate in bioinformatics pipelines
Nextflow_pipelines
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8
The set of NGS processing pipelines used at Babraham
Dada2_guidelines
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8
A repository with a general dada2 pipeline for amplicon processing
Findfungi
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7
A pipeline for the identification of fungi in public metagenomics datasets
4 Rna Seq
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7
A slurm based pipeline for RNA-seq analysis to execute on linux clusters. Feel free to connect to visualize your RNA-seq data on the clouds
Canine
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6
A modular, high-performance computing solution to run jobs using SLURM
Speaqeasy
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6
SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.
Allmine
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5
AllMine, a flexible pipeline for Allele Mining. Develloped at INRA's GAFL unit :
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