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Search results for pipeline rna

14 search results found

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Rnafusion ⭐ 120

RNA-seq analysis pipeline for detection gene-fusions

Hlatyping ⭐ 34

Precision HLA typing from next-generation sequencing data

RNASeq pipeline

gatk4 RNA variant calling pipeline

Master of Pores 2

Pipeline Nanopore Denovo Isoforms ⭐ 19

Pipeline for de novo clustering of long transcriptomic reads

Rnasplice ⭐ 18

rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

Pipernaseq ⭐ 16

A comprehensive pipeline for RNAseq data analysis

Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.

Pipeline Polya Ng ⭐ 6

Pipeline for calling poly(A) tail lengths from nanopore direct RNA data using nanopolish

Nascent Transcription Processing Pipeline

CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.

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