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7 search results found

FunGAP: fungal Genome Annotation Pipeline

Dnapipete ⭐ 38

dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).

Nanopore raw signal repeat detection pipeline

Software for Quantifying Interspersed Repeat Expression

Repeatcraftp ⭐ 8

meta-pipeline for repetitive element de-fragmentation and annotation

RNA-seq pipeline to detect viral reads

Nf Repeatmasking ⭐ 5

Nextflow workflow for automatic repeat detection, classification and masking

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