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Search results for r pipeline

pipeline x
r x
149 search results found
Ripe ⭐ 10
rerun {magrittr} pipelines
Cancer Biomarker Prediction Pipeline Campp ⭐ 10
The Cancer bioMarker Prediction Pipeline (CAMPP)
Cinar ⭐ 10
A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)
Forecastframework ⭐ 9
Create modular models. Quickly prototype models whose input includes (multiple) time series data. Create pieces of model use cases separately, and swap out particular models as desired. Create modeling competitions, data processing pipelines, and re-useable models.
Secretsanta ⭐ 9
flexible pipelines for scalable secretome prediction, R package
Smart ⭐ 9
Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping
Gcap ⭐ 9
GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data and absolute copy number profiles
Eeg_to_erp_pipeline_stats_r ⭐ 9
General pipeline used for analyzing EEG data where Raw EEG data gets transformed into ERPS and Stats are done in R (Mixed effects models)
Rna Seq ⭐ 9
RNA-seq analysis scripts
Gimpute ⭐ 9
An efficient genetic data imputation pipeline
Bmo ⭐ 8
BMO - a tool for predicting TF binding from ATAC-seq data
Rescue ⭐ 8
Bootstrap imputation for scRNAseq data
Comms Rs ⭐ 8
A library for building DSP communication pipelines.
Splicify ⭐ 8
Seqprocess ⭐ 8
SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
Eems Around The World ⭐ 8
Repo to analyze population genetic data with many different methods
Poma ⭐ 8
📦 Tools for Omics Data Analysis
Dada2_guidelines ⭐ 8
A repository with a general dada2 pipeline for amplicon processing
Dnaseq_pipeline ⭐ 8
Pipeline in place at the UGI for DNA level analysis
Trna ⭐ 8
tRNA gene regulation downstream analysis
Dvc_r_ensemble ⭐ 7
Materials of a case study to build a DVC-based ML pipeline for an R project with ensemble prediction
Tad_pathways_pipeline ⭐ 7
Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs
Zamp ⭐ 7
zAMP is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics
Curatedpcadata ⭐ 7
Curated Prostate Cancer Data R-package
Medip Seq ⭐ 7
A set of scripts and functions for analyzing MeDIP-seq datasets
Bdclean ⭐ 7
User-friendly data cleaning pipeline for the inexperienced R user
Epigenomics_cwl ⭐ 7
SCREW: A Reproducible Workflow for Single-Cell Epigenomics
Multiassayexperiment.tcga ⭐ 7
Finemapr ⭐ 7
Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
Targets Keras ⭐ 7
An example Keras pipeline with the targets R package
Rnasum ⭐ 7
Pipeline for generating RNAseq-based cancer patient reports
Nba Attendance Prediction ⭐ 7
Attendance prediction tool for NBA games using machine learning. Full pipeline implemented in Python from data ingestion to prediction. Attained mean absolute error of around 800 people (about 5% capacity) on test set.
Omics Analysis ⭐ 7
Omics Analysis
Aa_subtypes ⭐ 7
Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape
Rnaseqcomp ⭐ 7
Benchmarks for RNA-seq quantification pipelines
Tpotr ⭐ 7
An R-Wrapper for the Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming (TPOT)
Ramwas ⭐ 6
RaMWAS: Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms
Pachyderm R ⭐ 6
R ML Pipeline in Pachyderm
Article Microarrays ⭐ 6
Direct integration of microarray data — R scripts for comparing different microarray annotations and probesets selection for cross-platform direct data integration
Tag Seq ⭐ 6
3’ Tag RNA-seq pipeline (Work in progress)
Kidney_sc_immune ⭐ 6
Repository for scRNAseq study of human kidneys
Genehummus ⭐ 6
An Automated Pipeline to Classify Gene Families based on Protein Domain Organization using Auxin Response Factors in Legumes as an Example
Knowseq ⭐ 6
KnowSeq R package
Digitaldlsorter ⭐ 6
A pipeline to generate a Deep Nerual Network cell type deconvolution model for bulk RNASeq samples from single cell experiment data
Lake Temperature Model Prep ⭐ 6
Pipeline #1
Rnaseqdepipeline ⭐ 6
RNA-Seq differential gene expression pipeline
Rna Seq Analysis ⭐ 6
The analytic pipeline used for RNA Sequencing
Structuredpriorsmrp_public ⭐ 6
Repository for reproducing results in structured priors MRP paper
Sparklyr2pmml ⭐ 6
R library for converting Apache Spark ML pipelines to PMML
Frogcap Sequence Capture ⭐ 6
Probe set files and pipeline for the analysis of data acquired from the Hutter et al. (2021) sequence capture probe set for all frogs
Scooter ⭐ 5
single-cell RNA-seq analysis pipeline
Recenthgt ⭐ 5
A novel bioinformatics pipeline for recent horizontal gene transfer detecting.
As_analysis ⭐ 5
A complete Snakemake pipeline for detecting allele specific expression
Sygnal ⭐ 5
SYstems Genetic Network AnaLysis (SYGNAL) pipeline
Gatk4wxscnv ⭐ 5
Pipeline for WXS CNV using GATK4
Sqtlseeker2 Nf ⭐ 5
An automated sQTL mapping pipeline using Nextflow
Sl3_lecture ⭐ 5
📓 💪 An introductory workshop lecture on ensemble machine learning with pipelines using the sl3 R package
Bioinformatics_pipeline ⭐ 5
Bioinformatics Pipeline
Encode_tf_chip_pipeline ⭐ 5
minimal pipeline for SPP and MACS2 peak calling plus secondary IDR analysis
Drake Egg Rap ⭐ 5
🦆🥚🎤 Demo: {drake} for reproducible pipelines with UK government stats reports
Targets Design ⭐ 5
targets R package design specification
Tmr_search ⭐ 5
Transcriptional Master Regulator search in Cancer, a pipeline using MARINa
Logical_modelling_pipeline ⭐ 5
Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, developed by the Computational Systems Biology of Cancer group in Bioinformatics Laboratory of Institut Curie (Paris)
Iguide ⭐ 5
Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9.
X Orgin ⭐ 5
XOrigin is a pipeline to estimate expansion origins from derived SNPs, which incorporate temporal and spatial heterogeneity. It is best suited for estimating refugia for species that experienced distributional shifts during last glacial maximum. The pipeline is dependent on SPLATCHE2 for spatially-explicit demographic simulations, and make use of the spatial statistics Psi to estimate expansion origins.
Viral_variant_caller ⭐ 5
A nextflow pipeline to call single nucleotide and structural variants in viral populations
Microbiome ⭐ 5
The standardized analysis pipeline used for analyzing 16S and metagenome data.
Shiny Seq ⭐ 5
Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data
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