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Search results for pipeline microbiome

10 search results found

Ampliseq ⭐ 141

Amplicon sequencing analysis workflow using DADA2 and QIIME2

Taxprofiler ⭐ 78

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

Microbiomebestpracticereview ⭐ 45

Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing

Metasub_cap ⭐ 16

A comprehensive pipeline for short read metagenomic data

The Microbial Co-occurrence Network Explorer

Snakemake workflow for comparison of differential abundance ranks

Tofu Maapo ⭐ 6

Nextflow pipeline for the analysis of metagenomic short reads.

Snakemake pipeline for microbiome diversity effect size benchmarking

Microbiome ⭐ 5

The standardized analysis pipeline used for analyzing 16S and metagenome data.

Metasequencing ⭐ 5

A metagenomics pipeline using the CGAT framework.

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