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Search results for phasing
phasing
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18 search results found
Octopus
⭐
285
Bayesian haplotype-based mutation calling
Princess
⭐
74
Vcf Simplify
⭐
45
A python parser to simplify and build the VCF (Variant Call Format).
Clairs
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42
ClairS - a deep-learning method for long-read somatic small variant calling
Subphaser
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40
Phase, partition and visualize subgenomes of an allopolyploid or hybrid based on the subgenome-specific repetitive kmers.
Nphase
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39
Ploidy agnostic phasing pipeline and algorithm
Shapeit5
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38
Segmented HAPlotype Estimation and Imputation Tool
Hiphase
⭐
37
Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
Deploid
⭐
18
dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.
Minorseq
⭐
14
Minor Variant Calling and Phasing Tools
Indelpost
⭐
11
Python library for simple and complex indels.
Microphaser
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11
Gwaspy
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10
GWAS QC, PCA, haplotype phasing, genotype imputation
Gimpute
⭐
9
An efficient genetic data imputation pipeline
Project Diploid Assembly
⭐
8
Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data
Strainflye
⭐
7
Pipeline for analyzing (rare) mutations in metagenome-assembled genomes
Phimtools
⭐
6
A phasing and imputation pipeline for NGS data
Imputation Ukb Ref Panel
⭐
5
Genotype imputation pipelines for the UK Biobank Research Analysis Platform
Related Searches
Haplotypes Phasing (6)
Bioinformatics Phasing (5)
Python Phasing (4)
Variants Phasing (4)
Pipeline Phasing (4)
Imputation Phasing (4)
Long Reads Phasing (3)
Vcf Phasing (3)
C Plus Plus Phasing (3)
Jupyter Notebook Phasing (3)
1-18 of 18 search results
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