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protein
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42 search results found
Prokka
⭐
415
⚡ ♒ Rapid prokaryotic genome annotation
Ensembl Vep
⭐
410
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
Braker
⭐
293
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
Feelnc
⭐
61
FEELnc : FlExible Extraction of LncRNA
Crisprcasfinder
⭐
54
A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences
Hmmer2go
⭐
36
Annotate DNA sequences for Gene Ontology terms
Hotspot3d
⭐
33
3D hotspot mutation proximity analysis tool
Paperblast
⭐
27
PaperBLAST: find papers about a protein or its homologs
Bitacora
⭐
27
BITACORA: A Bioinformatics tool for gene family annotation
Cegma_v2
⭐
18
The final version 2 release of our software to detect core genes in eukaryotic genomes
Metaerg
⭐
17
Ca Backbone Prediction
⭐
17
Deep Learning for Ca Backbone Prediction from High Resolution CryoEM Data
Shotmap
⭐
17
A Shotgun Metagenome Annotation Pipeline
Get_jgi_genomes
⭐
16
A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
Orthomcl
⭐
14
Appris
⭐
12
Annotating principal splice isoforms
Pconsc3
⭐
12
Faster, more accurate and entirely open source method for predicting contacts in proteins
Genodup Pipeline
⭐
11
This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.
Viroblaststandalone
⭐
10
ViroBLAST standalone package
Sword2
⭐
10
SWift and Optimized Recognition of protein Domains
Bioinfo
⭐
10
Bioinformatics modules for Perl6 designed for parallel use.
Phylostratigraphy
⭐
9
Pipeline for Phylostratigraphy
Cmod.django
⭐
9
CMOD Wikidata App built on Django Framework for editing Wikidata with existing GeneWIki bot code
Fgmp
⭐
9
Fungal Genome Mapping Pipeline
Fa Nf
⭐
9
Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow
Pathfx
⭐
8
Most up to date PathFX code
Invasive_salmonella
⭐
7
Data and code to accompany our paper on identifying patterns of gene degradation associated with invasiveness in Salmonella
Darkhorse2
⭐
7
DarkHorse2 source code
Confold
⭐
7
Contact-based protein structure prediction
Confold2
⭐
7
Improved ab initio protein structure reconstruction
Consurf
⭐
7
Evolutionary conservation estimation of residues or nucleotides
E Driver
⭐
7
This repository contents a script to run e-Driver as well as the necessary files to reproduce the results presented in the paper describing the algorithm.
Dnss
⭐
6
Deep learning networks for protein secondary structure prediction
Sm_assemblies
⭐
6
Analysis of protein coding exons in single molecule assemblies
Jamp
⭐
6
Just Annotate My Proteins
Ripper
⭐
6
Searching for precursor peptide genes for ribosomally synthesized and post-translationally modified peptides (RiPPs).
Phylogenomics Tools
⭐
6
Scripts for automating tasks in phylogenetics with microbial genomes
Rubble
⭐
5
A blast-based protein homology pipeline
Multicom
⭐
5
The MULTICOM protein structure system. This repository includes the source code and documents of both template-based and template-free modeling of the MULTICOM protein structure prediction system. 1D feature prediction, contact prediction, and clustering-based model ranking programs are also included.
Intpred
⭐
5
Medusa
⭐
5
A Deep Learning based protein flexibility prediction tool.
Llama Magic
⭐
5
Hypertribe
⭐
5
Software for updated version of TRIBE
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1-42 of 42 search results
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