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Genome Assembly and Annotation Service code

Ltr_retriever ⭐ 167

LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.

Svanalyzer ⭐ 68

Tools for the analysis of structural variation in genomes

Virsorter ⭐ 66

Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)

Plasflow ⭐ 61

Software for prediction of plasmid sequences in metagenomic assemblies

A toolbox for pangenome analysis and threshold evaluation.

Mtbseq_source ⭐ 32

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

Hla Polysolver ⭐ 9

Fork of the Polysolver project

Yet another M.tuberculosis typing and resistance tool, but for the impatient (not in-patient)

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