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Search results for orthologs

10 search results found

Orthofinder ⭐ 547

Phylogenetic orthology inference for comparative genomics

Orthoevolution ⭐ 28

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

Phyloprofile ⭐ 26

A phylogenetic profile analysis tool

Swiftortho ⭐ 21

A high performance tool to identify orthologs and paralogs across genomes.

CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on co-linearity between them. OrthNets enable detection of all orthologous gene groups that share the same evolutionary history, using a search based on network topology

Feature-aware Directed OrtholoG search

Assembly of Phylogenomic Datasets from High-Throughput Sequencing data

Supermatrix ⭐ 8

scripts to process, join, split, or add new proteins to a supermatrix alignment using hmms

Reciprologs ⭐ 6

Find reciprocal best hits (DIAMOND or BLAST) between two (or more!) sets of sequences.

Ortho2align ⭐ 5

ortho2align is a lncRNA ortholog discovery CLI tool based on syntenic regions and statistical assessment of alignment nonrandomness.

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