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Search results for ngs pipeline

19 search results found

Awesome Omics ⭐ 536

A collection of awesome things regarding all omics.

Ngs_pipeline ⭐ 31

Exome/Capture/RNASeq Pipeline Implementation using snakemake

Csbb Shiny ⭐ 28

Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis

Cwl Ngs Workflows Cbb ⭐ 23

A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis

Project Manager for NGS data analysis

Open_pipelines ⭐ 17

Pipelines for NGS data preprocessing by the Bock lab and friends

Tracespipe ⭐ 16

Reconstruction and analysis of viral and host genomes at multi-organ level

SARS-CoV-2 Genome Assembler

A fast, easy way to present complex bioinformatics pipelines to biologists

FASTQ-to-CodFreq pipeline for HIV-1 and SARS-CoV-2

Lescroart2023 ⭐ 7

Archived code for analyses in "Extensive phylogenomic discordance and the complex evolutionary history of the Neotropical cat genus Leopardus" (Lescroart et al. 2023, MBE)

Biowardrobe ⭐ 7

BioWardrobe: an integrated platform for analysis of epigenomics and transcriptomics data

Snipgenie ⭐ 6

command line and desktop tool for microbial variant calling

Nxf Fastqc ⭐ 5

A simple fastp-MultiQC nextflow pipeline

Sentieon Google Genomics ⭐ 5

Run Sentieon pipelines on Google Cloud Platform

Cb2 Experiments ⭐ 5

CB2-Experiments is the repository of scripts and data of experiments were performed to benchmark the performance of CB2.

Snakemake Slurm Tutorial ⭐ 5

Working example of snakemake tutorial using UAB Cheaha computing cluster via SLURM scheduler

AllMine, a flexible pipeline for Allele Mining. Develloped at INRA's GAFL unit :

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Python Ngs Pipeline (18)

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