Awesome Open Source

Programming Languages

Search results for medical image analysis

medical-image-analysis x

119 search results found

Torchio ⭐ 1,904

Medical imaging toolkit for deep learning

Medicaldetectiontoolkit ⭐ 1,249

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

Niftynet ⭐ 1,170

[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy

Awesome Transformers In Medical Imaging ⭐ 984

A collection of resources on applications of Transformers in Medical Imaging.

Medmnist ⭐ 903

[pip install medmnist] 18x Standardized Datasets for 2D and 3D Biomedical Image Classification

⚡High Performance DICOM Medical Image Parser in Go.

Breast_cancer_classifier ⭐ 804

Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening

Torchxrayvision ⭐ 760

TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.

Lungmask ⭐ 576

Automated lung segmentation in CT

Wama_modules ⭐ 501

A PyTorch Computer Vision (CV) module library for building n-D networks flexibly ~

Medical Transformer ⭐ 484

Official Pytorch Code for "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation" - MICCAI 2021

Deepslide ⭐ 449

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

Knowledge-Aware machine LEarning (KALE): accessible machine learning from multiple sources for interdisciplinary research, part of the 🔥PyTorch ecosystem. ⭐ Star to support our work!

Transformer_for_medical_image_analysis ⭐ 412

A collection of papers about Transformer in the field of medical image analysis.

A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

Covid19_imaging_ai_paper_list ⭐ 287

COVID-19 imaging-based AI paper collection

Tiatoolbox ⭐ 277

Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

Fewshot_gan Unet3d ⭐ 239

Tensorflow implementation of our paper: Few-shot 3D Multi-modal Medical Image Segmentation using Generative Adversarial Learning

[IEEE Transactions on Medical Imaging/TMI] This repo is the official implementation of "LViT: Language meets Vision Transformer in Medical Image Segmentation"

Multiplanarunet ⭐ 179

Multi-Planar UNet for autonomous segmentation of 3D medical images

Deepbrainseg ⭐ 167

Fully automatic brain tumour segmentation using Deep 3-D convolutional neural networks

Mednext ⭐ 161

MedNeXt is a fully ConvNeXt architecture for 3D medical image segmentation (MICCAI 2023).

Covidprognosis ⭐ 151

COVID deterioration prediction based on chest X-ray radiographs via MoCo-trained image representations

Official website for "Video Polyp Segmentation: A Deep Learning Perspective (MIR 2022)"

Acsconv ⭐ 138

[IEEE JBHI] Reinventing 2D Convolutions for 3D Images - 1 line of code to convert pretrained 2D models to 3D!

Livianet ⭐ 133

This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"

Gans_paper_collection ⭐ 132

A generalizable application framework for segmentation, regression, and classification using PyTorch

Pneumonia Detection From Chest X Ray Images With Deep Learning ⭐ 112

Detecting Pneumonia in Chest X-ray Images using Convolutional Neural Network and Pretrained Models

Hyperdensenet ⭐ 106

This repository contains the code of HyperDenseNet, a hyper-densely connected CNN to segment medical images in multi-modal image scenarios.

Segment Anything Medical Evaluation ⭐ 95

Code for "Segment Anything Model for Medical Image Analysis: an Experimental Study" in Medical Image Analysis

medigan - A Python Library of Pretrained Generative Models for Medical Image Synthesis

An official implementation of PCRLv2 (pre-training and fine-tuning code are included).

Daeformer ⭐ 79

[MICCAI 2023] DAE-Former: Dual Attention-guided Efficient Transformer for Medical Image Segmentation

A multi-modal CLIP model trained on the medical dataset ROCO

Digipathai ⭐ 56

Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay

ICLR 2023 - FedFA: Federated Feature Augmentation

[MICCAI'21] [Tensorflow] Retinal Vessel Segmentation using a Novel Multi-scale Generative Adversarial Network

Histogan ⭐ 50

Code for "Generative Image Translation for Data Augmentation in Colorectal Histopathology Images" full paper at ML4H Workshop at NeurIPS 2019.

Library and executables for modeling and registration applications in medical image analysis. Particular emphasis on intraoperative fluoroscopic (X-ray) navigation via 2D/3D registration.

Covid19.miscnn ⭐ 48

Robust Chest CT Image Segmentation of COVID-19 Lung Infection based on limited data

Tutorial Medical Image Registration ⭐ 48

Medical Image Registration

pymia: A Python package for data handling and evaluation in deep learning-based medical image analysis

Pytorch Classification ⭐ 47

A general, feasible, and extensible framework for classification tasks.

Ai Projects For Healthcare ⭐ 46

This repository is included artificial intelligence, machine learning, data science, computer vision projects related to healthcare.

An AI-powered open-source medical image analysis toolbox

Cvt2distilgpt2 ⭐ 46

Improving Chest X-Ray Report Generation by Leveraging Warm-Starting

Deep Attentive Features for Prostate Segmentation in 3D Transrectal Ultrasound

Rcs Yolo ⭐ 43

Official implementation of "RCS-YOLO: A Fast and High-Accuracy Object Detector for Brain Tumor Detection".

Ocular Disease Intelligent Recognition Deep Learning ⭐ 35

ODIR-2019. Ocular Disease Intelligent Recognition Through Deep Learning Architectures

Learningnote ⭐ 33

some resources on my path in deep learning and medical image analysis

Data Consistency Toolbox for Magnetic Resonance Imaging

Optic Disk Cup Segmentation ⭐ 33

Optic Disc and Optic Cup Segmentation using 57 layered deep convolutional neural network

Code for 'Constrained Contrastive Distribution Learning for Unsupervised Anomaly Detection and Localisation in Medical Images' [MICCAI 2021]

This repository holds the code framework used in the paper Reg R-CNN: Lesion Detection and Grading under Noisy Labels. It is a fork of MIC-DKFZ/medicaldetectiontoolkit with regression capabilites.

Cancer Detection From Microscopic Tissue Images With Deep Learning ⭐ 28

Cancer Detection from Microscopic Images by Fine-tuning Pre-trained Models ("Inception") for new class labels

Deepatlas ⭐ 27

Joint Semi-supervised Learning of Image Registration and Segmentation

Pooya Mohammadi ⭐ 27

This is Pooya Mohammadi, Open Source Enthusiast, AI Developer & Researcher

Simpleitk Snap ⭐ 27

A qt-based 3D data visualization tool.

Awesome Active Learning For Medical Image Analysis ⭐ 25

A paper list of active learning in medical image analysis and computer vision

Stratified K Fold Cross Validation Image Classification Keras ⭐ 23

This python program demonstrates image classification with stratified k-fold cross validation technique.

Multi Scale Curriculum ⭐ 22

Code for Paper: Multi Scale Curriculum CNN for Context-Aware Breast MRI Malignancy Classification

Mid Dran ⭐ 22

This is the official implementation of state-of-the-art medical image denoising method titled as "Dynamic Residual Attention Network (DRAN)".

Cst Yolo ⭐ 22

Official implementation of "CST-YOLO: A Novel Method for Blood Cell Detection Based on Improved YOLOv7 and CNN-Swin Transformer".

Fastmri_prostate ⭐ 21

A large scale dataset and reconstruction script of both raw prostate MRI measurements and images

A browser-based tool for image annotation

Official code for Robust T-Loss for Medical Image Segmentation (MICCAI 2023)

Vox2Vox: 3D GAN for image segmentation using tensorflow-keras

DeDA: Differentiable Image Integration Library

Medical Image Analysis Lab (MIALab), University of Bern

A Python package for geometric transformations of images for data augmentation in deep learning

Covid 19_prognosis ⭐ 19

An artificial intelligence system for predicting the deterioration of COVID-19 patients in the emergency department

Cl Detection2023 ⭐ 18

CL-Detection2023 Challenge Official Repository

Sarcopenia Ai ⭐ 18

Code for paper Kanavati, F. et al. (2020). Fully-automated deep learning slice-based muscle estimation from CT images for sarcopenia assessment. arXiv preprint arXiv:2006.06432.

Bgf Yolo ⭐ 18

Official implementation of "BGF-YOLO: Enhanced YOLOv8 with Multiscale Attentional Feature Fusion for Brain Tumor Detection".

[PR2022] The Code of “EANet: Iterative Edge Attention Network for Medical Image Segmentation”

Plaquebox Paper ⭐ 18

Repo for Tang et al, bioRxiv 454793 (2018)

a framework for Automated Classification of Medical Images

Lesion Based Contrastive Learning ⭐ 17

This is the official implementation of the paper Lesion-based Contrastive Learning for Diabetic Retinopathy Grading from Fundus Images.

Mha Unet ⭐ 16

The official code for "Only Positive Cases: 5-fold High-order Attention Interaction Model for Skin Segmentation Derived Classification".

TextSCF: LLM-Enhanced Image Registration Model

Riadd.aucmedi ⭐ 16

Multi-Disease Detection in Retinal Imaging based on Ensembling Heterogeneous Deep Learning Models

Cl Detection2023 Mmpose ⭐ 15

CL-Detection2023 Challenge Official Repository

Brain Tumor Segmentation ⭐ 14

Fully automatic brain tumor segmentation using the Modified 3DUNet architecture for Brats 2020 Challenge.

Beamdoseprediction ⭐ 13

A python (Pytorch) implementation of Beam Dose Decomposition for Dose Prediction [MICCAI 2022]

O-MedAL: Online Active Deep Learning for Medical Image Analysis. This repo contains code for the paper.

Radiomics Research By Using Python ⭐ 12

Radiomics (here mainly means hand-crafted based radiomics) contains data acquire, ROI segmentation, feature extraction, feature selection, machine learning modeling, and stastical analysis.

2018 Data Science Bowl ⭐ 12

Kaggle Competitions: Find the nuclei in divergent images to advance medical discovery

Survey Attention Medical Imaging ⭐ 10

Implementation of the paper "A survey on attention mechanisms for medical applications: are we moving towards better algorithms?" by Tiago Gonçalves, Isabel Rio-Torto, Luís F. Teixeira and Jaime S. Cardoso.

Fetal Distress Classification ⭐ 10

Project to save innocent infant lives using Cardiotocography and CNN image classification

Naviairway ⭐ 10

NaviAirway: a Bronchiole-sensitive Deep Learning-based Airway Segmentation Pipeline

Awesome Foundation Models In Medical Imaging ⭐ 9

A curated list of foundation models for vision and language tasks in medical imaging

Spatiotemporal Cnn Transformer ⭐ 9

[MICCAI 2022] Official Implementation for "Hybrid Spatio-Temporal Transformer Network for Predicting Ischemic Stroke Lesion Outcomes from 4D CT Perfusion Imaging"

GLioblastoma Image Analysis for integrating brain tumor growth models with medical imaging

Ffc3dlungdir ⭐ 9

An unsupervised deep learning-based approach for 4D-CT lung Deformable Image Registration

Histoprep ⭐ 9

Preprocessing module for large histological images

Improved Bagan Gp ⭐ 8

Generate high quality images for each class even with an imbalanced dataset. An improved version of Balancing GAN.

Cup And Disc Segmentation For Glaucoma Detection Cdr Calculation ⭐ 8

An adaptive threshold based algorithm for optic disc and cup segmentation in fundus images

AirQuant is a framework based in MATLAB primarily for extracting airway measurements from fully segmented airways of a chest CT.

Dose_prediction ⭐ 8

A Cascade Transformer-based Model for 3D Dose Distribution Prediction in Head and Neck Cancer Radiotherapy

1-100 of 119 search results

Privacy | About | Terms | Follow Us On Twitter

Copyright 2018-2024 Awesome Open Source. All rights reserved.