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Identification of differential RNA modifications from nanopore direct RNA sequencing

CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

Cell2cell ⭐ 44

User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins

Deep Learning based cell composition analysis with Scaden.

Iterative transfer learning with neural network improves clustering and cell type classification in single-cell RNA-seq analysis

Rnaseq_titration_results ⭐ 29

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)

Devcellpy ⭐ 18

devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.

Gene Oracle ⭐ 13

Feature extraction algorithm for genomic data

Seq Pipeline ⭐ 12

Workspace for data science projects and NGS pipelines. Contains RStudio, Jupyter Notebook, VSCode and file manager. Can connect to Tailscale network to bypass firewalls.

KnowSeq R package

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