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Search results for machine learning proteomics
machine-learning
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proteomics
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15 search results found
Alphapeptdeep
⭐
81
Deep learning framework for proteomics
Awesome Structural Bioinformatics
⭐
54
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
Omiclearn
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50
🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
Astir
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42
astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
Proteomicsml
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33
Community-curated tutorials and datasets for ML in proteomics
Mokapot
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31
Fast and flexible semi-supervised learning for peptide detection in Python
Dlomix
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17
Python framework for Deep Learning in Proteomics
Kineticlearning
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13
Learning Kinetic Models from Time Series Proteomics and Metabolomics Data
Pcprophet
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11
Framework for systematic discovery of novel complexes and differential analysis of cofractionation MS datasets
Pymultiomics
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9
Python toolbox for multi-omics data mapping and analysis
Promor
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9
A comprehensive R package for label-free proteomics data analysis and modeling
Ionmob
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8
An open-source prediction framework for peptide ion collision cross section (CCS) values with python.
Xirt
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8
Multi-Dimensional Retention Time Prediction for Linear and Crosslinked Peptides
Prospect
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7
Proteomics Mass Spectrometry Datasets for Machine Learning
Phage Host Prediction
⭐
7
Published in PLOS ONE. We show that using embeddings of receptor-binding proteins presents improvements over handcrafted genomic and protein sequence features for phage-host interaction prediction — with the highest performance obtained using the transformer-based protein language model ProtT5
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