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Search results for jupyter notebook transcriptomics

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15 search results found

Pathomicfusion ⭐ 148

Fusing Histology and Genomics via Deep Learning - IEEE TMI

Sg Nex Data ⭐ 80

Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

Celldancer ⭐ 46

Predict RNA velocity through deep learning

Tabula Sapiens ⭐ 29

Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens

Cellenium ⭐ 20

Cellenium is a FAIR and scalable interactive visual analytics app for scRNA-Seq data (single-cell RNA sequencing).

A prediction model for differential gene expression (DE) based on genome-wide regulatory interactions

Clustermap ⭐ 18

ClusterMap for multi-scale clustering analysis of spatial gene expression

Unitvelo ⭐ 18

UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference

Rna Seq Pop ⭐ 17

Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data

Isotools ⭐ 15

IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.

Topicvelo ⭐ 11

TopicVelo: Dissection and Integration of Bursty Transcriptional Dynamics for Complex Systems

A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics

Pymultiomics ⭐ 9

Python toolbox for multi-omics data mapping and analysis

Single cell interactive plotting tools

Interpretable model of sub-cellular RNA localization.

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