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Search results for jupyter notebook single cell rna seq

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17 search results found

A Bayesian model for compositional single-cell data analysis

Scdeepcluster ⭐ 86

scDeepCluster for Single Cell RNA-seq data

Single-cell disease relevance score (scDRS)

Single-Cell Clustering Assessment Framework

CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

Celldancer ⭐ 46

Predict RNA velocity through deep learning

Clustering_on_transcript_compatibility_counts ⭐ 40

Clustering cells from single cell RNA seq assays

Randomly ⭐ 33

A Library for Denoising Single-Cell Data with Random Matrix Theory

Tabula Sapiens ⭐ 29

Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens

Umi Normalization ⭐ 26

Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology

Pseudodynamics ⭐ 23

Dynamic models for single-cell RNA-seq time series.

Accurate and fast cell marker gene identification with COSG

Scdeepcluster_pytorch ⭐ 22

Pytorch implementation of scDeepCluster for Single Cell RNA-seq data

Pysctransform ⭐ 10

Transmorph ⭐ 10

Computational framework for dataset integration

2020_grant ⭐ 6

Code base for the Grant, Morales-Nebreda, and Markov et al., “Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia” Nature (2021) paper

Brie Tutorials ⭐ 5

Tutorials for using BRIE

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