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Search results for jupyter notebook scrna seq
jupyter-notebook
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scrna-seq
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24 search results found
Scarches
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294
Reference mapping for single-cell genomics
Palantir
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184
Single cell trajectory detection
Tangram
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153
Spatial alignment of single cell transcriptomic data.
Symphony
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73
Efficient and precise single-cell reference atlas mapping with Symphony
Bulk2space
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68
a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell expression profiles
Doubletdetection
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60
Doublet detection in single-cell RNA-seq data.
Scperturb
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56
scPerturb: A resource and a python/R tool for single-cell perturbation data
Scfea
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47
single cell Flux Estimation Analysis (scFEA) Try the below web server!
Harmony
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38
Harmony framework for connecting scRNA-seq data from discrete time points
Desc
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38
Deep Embedding for Single-cell Clustering
Babel
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32
Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
Scib Reproducibility
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25
Additional code and analysis from the single-cell integration benchmarking project
Clustergrammer2 Notebooks
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22
Examples using Clustergrammer2 to explore high-dimensional datasets.
Cellenium
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20
Cellenium is a FAIR and scalable interactive visual analytics app for scRNA-Seq data (single-cell RNA sequencing).
Symphonypy
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19
Port of symphony algorithm of single-cell reference atlas mapping to Python
Devcellpy
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18
devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.
Singlecell_neuroseq_paper
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18
Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation
Visium Clustergrammer2
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14
Spatial Transcriptomics Dashboard
Singlecell_endodiff_paper
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11
Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression
Topicvelo
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11
TopicVelo: Dissection and Integration of Bursty Transcriptional Dynamics for Complex Systems
Discbio
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9
A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics
Scplot
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8
Single cell interactive plotting tools
Atac Annotation Benchmark
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6
scripts for manuscript 'benchmarking automated cell type annotation tools for single-cell ATAC-seq data'
Neuroblastoma
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6
Single-cell transcriptomics and epigenomics unravel the role of monocytes in neuroblastoma bone marrow metastasis
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