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Search results for jupyter notebook proteomics
jupyter-notebook
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proteomics
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22 search results found
Ckg
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184
Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph
Alphapeptdeep
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81
Deep learning framework for proteomics
Alphamap
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66
An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
Alphapeptstats
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37
Python Package for the downstream analysis of mass-spectrometry-based proteomics data
Proteomicsml
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33
Community-curated tutorials and datasets for ML in proteomics
Directlfq
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27
Fast and accurate label-free quantification for small and very large numbers of proteomes
Fava
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23
Functional Associations using Variational Autoencoders
Omicsintegrator2
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20
Prize-Collecting Steiner Forests for Interactomes
Alphabase
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20
Infrastructure of AlphaX ecosystem
Autort
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16
AutoRT: Peptide retention time prediction using deep learning
Kineticlearning
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13
Learning Kinetic Models from Time Series Proteomics and Metabolomics Data
Mmtf Proteomics
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11
Methods for mapping proteomics data on 3D protein structure.
Isoprot
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11
Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering
Pymultiomics
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9
Python toolbox for multi-omics data mapping and analysis
Irs_normalization
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9
An exploration of internal reference scaling (IRS) normalization in isobaric tagging proteomics experiments.
Shannonmets
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9
** Blood metabolome predicts gut microbiome α-diversity in humans**
Amp_phase1_ra
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8
🌾 Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.
Ald Study
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8
ALD study data analysis
Tmt_analysis_examples
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7
Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.
Cohorts
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7
A python package for standardized and reproducible processing, analysis, and integration of clinical proteomics data
Phage Host Prediction
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7
Published in PLOS ONE. We show that using embeddings of receptor-binding proteins presents improvements over handcrafted genomic and protein sequence features for phage-host interaction prediction — with the highest performance obtained using the transformer-based protein language model ProtT5
Cptac Proteomics Pipeline
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5
The research and processing repo for import of CPTAC data into cBioPortal
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