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Search results for jupyter notebook protein sequences

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9 search results found

Mmtf Pyspark ⭐ 64

Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.

A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design

Amazon Sagemaker Protein Classification ⭐ 35

Implementation of Protein Classification based on subcellular localization using ProtBert(Rostlab/prot_bert_bfd_localization) model from Hugging Face library, based on BERT model trained on large corpus of protein sequences.

Flu Sequence Predictor ⭐ 34

An experimental deep learning & genotype network-based system for predicting new influenza protein sequences.

Sequencework ⭐ 22

programs and scripts, mainly python, for analyses related to nucleic or protein sequences

Pytorch Rgn ⭐ 19

Recurrent Geometric Network in Pytorch

Graph Part ⭐ 16

A biological sequence data partitioning method

Proteinsolver ⭐ 12

Graph neural network capable of generating novel amino acid sequences that fold into proteins with predetermined topologies.

Course_protein_language_modeling ⭐ 7

Blast Binder ⭐ 6

Repo for running command line-based BLAST in Jupyter environment provided via Binder.

Protein_optimize ⭐ 5

A software tool designed for protein optimization, ProteinOpti integrates sequence manipulation with structural analysis, streamlining the generation, prediction, and evaluation of protein variants using Google Colab.

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